DiSSCo / SDR

Specimen Data Refinery
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Create a Galaxy tool for Georg (georeferencing text) #6

Closed benscott closed 1 year ago

benscott commented 3 years ago

Actions for Ida following meeting 15th April 2021:

Georg currently has RESTful interface; add CLI interface to API

Documentation required:

PaulBrack commented 2 years ago

Update from Ida recently - this is done and needs testing

llivermore commented 2 years ago

2022-05-19 update from Ida (Stockholm/NRM) for documentation and summary of work:

The detailed technical documentation is in GitHub, under UK branch: https://github.com/Naturhistoriska/Georg/tree/uk

Georg UK instance is setup in georg-stage.nrm.se server (georg.nrm.se is for Nordic countries): For the UI: https://georg-stage.nrm.se/

For the API: https://georg-stage.nrm.se/api

API documentation in Swagger: https://georg-stage.nrm.se/swagger-ui/index.html?url=/api/swagger.json

Data sources are imported from: OpenStreetMap http://download.geofabrik.de/europe/great-britain/england-latest.osm.pbf http://download.geofabrik.de/europe/great-britain/scotland-latest.osm.pbf http://download.geofabrik.de/europe/great-britain/wales-latest.osm.pbf

Who’s on First https://spelunker.whosonfirst.org/id/85633159/ (For United Kingdom)

We use Trello to manage user stories, but they are in Swedish: https://trello.com/b/kSrLnV2U/georg-user-stories

llivermore commented 2 years ago

There is a branch that needs testing/merging (ben/georg). I have done some initial testing on example strings from the NHM Data Portal for both Swedish and UK localities.

This is will be dependent on the outputs of #73 and the possible changes to approach discussed in #59.

benscott commented 2 years ago

GEORG works for either scandi or UK. So we need to require per specimen country ISO code. Locality string is available from Teklia tool, so add that in.

benscott commented 2 years ago

Create another CVS: with country code and verbatim locality string.