search

DiamondLightSource / SuRVoS

(Su)per (R)egion (Vo)lume (S)egmentaton workbench
Apache License 2.0
25 stars 5 forks source link

Python Not Working and SuRVoS crashing #52

Open LizzieBolitho opened 5 years ago

LizzieBolitho commented 5 years ago

Hi,

I have been using SuRVoS on Windows 10 with anaconda3 command prompt and it works fine until I either try and add supervoxels or try and add annotations. Can anyone help as I have been trying to fix the problem for a while now

Thanks Lizzie

Aha! Link: https://dls1.aha.io/features/D-26

srikanthnagella commented 5 years ago

Which version of SuRVoS are you using and which graphics card? What error do you get in the command window?

LizzieBolitho commented 5 years ago

I am using the latest version of SuRVoS as it has only recently been installed. I have not been informed of which graphics card was installed but everything was working fine until python stopped working.

The error from oython I get is: Python has stopped working. A problem caused the program to stop working correctly. Windows will close the program and notify you if a solution is available.

I do not get an error message in the Anaconda command prompt as the whole thing crashes and closes

srikanthnagella commented 5 years ago

Why don't you try opening a command prompt and then run SuRVoS from there then when the program crashes it would leave the error messages in the prompt.

LizzieBolitho commented 5 years ago

I do not know how to run it in a command prompt, besides the anaconda command prompt. Can I run it from a normal command prompt?

srikanthnagella commented 5 years ago

Yes you can run in anaconda command prompt.

LizzieBolitho commented 5 years ago

So whenever the python error message comex up in python, all it says in the command promt is that it is generating supervoxels (what I was trying to do in SuRVoS). It forces you to cross off the python error message and then the anaconda prompt crashes without saying any error message, it just closes

srikanthnagella commented 5 years ago

What is the size of the input image?

LizzieBolitho commented 5 years ago

I think around 500,000 KB

srikanthnagella commented 5 years ago

Are dimensions greater than 1024 x 1024 x 1024?

LizzieBolitho commented 5 years ago

No they are 10 x 10 x 10 I believe

srikanthnagella commented 5 years ago

That's strange how can volume/image size with 10 x 10 x 10 has file size 500MB

LizzieBolitho commented 5 years ago

Apologies, the settings I put in for supervoxel were 10 x 10 x 10. The file size is around 500 MB and it said something about 946 x 946

srikanthnagella commented 5 years ago

Other reason it could fail is out of memory. is it possible to share the dataset for testing? Please send the link to my work email. srikanth.nagella @ stfc.ac.uk