Sample.py produces empty output

DigitalSlideArchive / HistomicsTK

A Python toolkit for pathology image analysis algorithms.

https://digitalslidearchive.github.io/HistomicsTK/

Apache License 2.0

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Sample.py produces empty output #27

Closed cooperlab closed 8 years ago

cooperlab commented 8 years ago

On images: TCGA-HW-8322-01Z-00-DX1.B6F32F6B-7FA3-42E4-98CB-F2F55208F7C4.svs TCGA-HT-7479-01Z-00-DX1.E310974D-E52C-4634-8E16-2A41E8C37D45.svs TCGA-DU-8165-01Z-00-DX1.8d633ff1-6aed-41e5-8518-8856dbe4a718.svs TCGA-DU-8166-01Z-00-DX1.82951397-8c63-4c0f-8696-f081b170e21f.svs

File "/opt/lib/python2.7/site-packages/histomicstk-0.1.0-py2.7.egg/histomicstk/Sample.py", line 119, in Sample Pixels = np.concatenate(Pixels, 1)

cooperlab commented 8 years ago

Fixed by #52