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DigitalSlideArchive / HistomicsTK

A Python toolkit for pathology image analysis algorithms.
https://digitalslidearchive.github.io/HistomicsTK/
Apache License 2.0
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In NucleiDetection CLI generate nuclear annotations as nuclear boundary polygons #272

Closed cdeepakroy closed 7 years ago

cdeepakroy commented 7 years ago

This issue involves using histomicstk.segmentation.label.trace_object_boundaries in NucleiDetection CLI to generate nuclei annotations in the form of nuclear boundary polygons.

Maybe there could be a CLI parameter to generate annotations as nuclei bounding boxes or boundary polygons.

cdeepakroy commented 7 years ago

This issue depends on an issue in large_image.

cdeepakroy commented 7 years ago

Fixed in PR #331