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DigitalSlideArchive / HistomicsTK

A Python toolkit for pathology image analysis algorithms.
https://digitalslidearchive.github.io/HistomicsTK/
Apache License 2.0
394 stars 117 forks source link

Easy setup of DSA stack using vagrant #40

Closed cdeepakroy closed 7 years ago

cdeepakroy commented 8 years ago

@brianhelba can we assign this to someone? This will allow everyone to use the same development environment.

brianhelba commented 8 years ago

This will be a part of the https://github.com/DigitalSlideArchive/digital_slide_archive repo. I'll try to add something basic today.

cdeepakroy commented 8 years ago

@brianhelba Ok. Also, can we base it out of ubuntu 16.04 so we can simply apt-get install insight-toolkit4-python and get ITK with python wrapping. We are currently writing functionality in HistomicsTK core which is already available in ITK.

brianhelba commented 8 years ago

+1 To using 16.04 eventually, as that will fix a lot of the pain we've had with VIPS / and OpenSlide.

However, 16.04 isn't going to be released for another 2 weeks, and it will be a while before everything gets fully migrated to that (e.g. we have to upgrade our own servers and VMs, Vagrant has to release a new image, Travis needs to support it).

So, I'm starting with support for 14.04 because I can adequately test on that right now, but we can add 16.04 as the various pieces come online.

cdeepakroy commented 8 years ago

Ok.

Vagrant already seems to have an image for ubuntu 16.04. See this.

According to this TravisCI doesnt plan to support 16.04 this year. They seem to suggest a workaround using Docker.