DigitalSlideArchive / HistomicsTK

A Python toolkit for pathology image analysis algorithms.
https://digitalslidearchive.github.io/HistomicsTK/
Apache License 2.0
391 stars 117 forks source link

auto-naming in analysis modules? #462

Closed yliu7366 closed 5 years ago

yliu7366 commented 6 years ago

Hi, would it be possible to automatically suggest output file names and locations based on input image name and location? For example, in the Color Deconvolution module, if the input filename is test.tiff, then the module automatically suggest test_stain1.tiff, test_stain2.tiff, and test_stain3.tiff as output filenames instead of letting user to open file dialog multiple times to set filenames, these output files could be conveniently saved at the same location as the input file. This will make HistomicsTK a lot easier to use. Thanks!

dgutman commented 6 years ago

We actually added that..I agree it's tedious.. I think it's being reviewed ...

On Feb 13, 2018 1:32 PM, "yliu7366" notifications@github.com wrote:

Hi, would it be possible to automatically suggest output file names and locations based on input image name and location? For example, in the Color Deconvolution module, if the input filename is test.tiff, then the module automatically suggest test_stain1.tiff, test_stain2.tiff, and test_stain3.tiff as output filenames instead of letting user to open file dialog multiple times to set filenames, these output files could be conveniently saved at the same location as the input file. This will make HistomicsTK a lot easier to use. Thanks!

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manthey commented 5 years ago

This was added some time ago.