Digo / hw5-team11

For class project homework 5
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Error in AnswerChoiceCandAnsSimilarityScorer.reconstruct #7

Closed Digo closed 11 years ago

Digo commented 11 years ago

Question: What regulates the production of neprilysin? Nov 11, 2013 8:00:22 PM org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl callAnalysisComponentProcess(407) SEVERE: Exception occurred org.apache.uima.analysis_engine.AnalysisEngineProcessException: Annotator processing failed.
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:391) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:296) at org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.processUntilNextOutputCas(ASB_impl.java:567) at org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.(ASB_impl.java:409) at org.apache.uima.analysis_engine.asb.impl.ASB_impl.process(ASB_impl.java:342) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.processAndOutputNewCASes(AggregateAnalysisEngine_impl.java:267) at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:267) at org.apache.uima.collection.impl.cpm.engine.ProcessingUnit.processNext(ProcessingUnit.java:897) at org.apache.uima.collection.impl.cpm.engine.ProcessingUnit.run(ProcessingUnit.java:577) Caused by: java.lang.IndexOutOfBoundsException: Index: 6, Size: 6 at java.util.ArrayList.rangeCheck(ArrayList.java:635) at java.util.ArrayList.get(ArrayList.java:411) at edu.cmu.lti.deiis.hw5.answer_ranking.AnswerChoiceCandAnsSimilarityScorer.reconstruct(AnswerChoiceCandAnsSimilarityScorer.java:208) at edu.cmu.lti.deiis.hw5.answer_ranking.AnswerChoiceCandAnsSimilarityScorer.process(AnswerChoiceCandAnsSimilarityScorer.java:60) at org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:375) ... 8 more

Nov 11, 2013 8:00:22 PM org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl processAndOutputNewCASes(275) SEVERE: Exception occurred org.apache.uima.analysis_engine.AnalysisEngineProcessException: Annotator processing failed.
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:391) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:296) at org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.processUntilNextOutputCas(ASB_impl.java:567) at org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.(ASB_impl.java:409) at org.apache.uima.analysis_engine.asb.impl.ASB_impl.process(ASB_impl.java:342) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.processAndOutputNewCASes(AggregateAnalysisEngine_impl.java:267) at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:267) at org.apache.uima.collection.impl.cpm.engine.ProcessingUnit.processNext(ProcessingUnit.java:897) at org.apache.uima.collection.impl.cpm.engine.ProcessingUnit.run(ProcessingUnit.java:577) Caused by: java.lang.IndexOutOfBoundsException: Index: 6, Size: 6 at java.util.ArrayList.rangeCheck(ArrayList.java:635) at java.util.ArrayList.get(ArrayList.java:411) at edu.cmu.lti.deiis.hw5.answer_ranking.AnswerChoiceCandAnsSimilarityScorer.reconstruct(AnswerChoiceCandAnsSimilarityScorer.java:208) at edu.cmu.lti.deiis.hw5.answer_ranking.AnswerChoiceCandAnsSimilarityScorer.process(AnswerChoiceCandAnsSimilarityScorer.java:60) at org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:375) ... 8 more

org.apache.uima.analysis_engine.AnalysisEngineProcessException: Annotator processing failed.
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:391) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:296) at org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.processUntilNextOutputCas(ASB_impl.java:567) at org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.(ASB_impl.java:409) at org.apache.uima.analysis_engine.asb.impl.ASB_impl.process(ASB_impl.java:342) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.processAndOutputNewCASes(AggregateAnalysisEngine_impl.java:267) at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:267) at org.apache.uima.collection.impl.cpm.engine.ProcessingUnit.processNext(ProcessingUnit.java:897) at org.apache.uima.collection.impl.cpm.engine.ProcessingUnit.run(ProcessingUnit.java:577) Caused by: java.lang.IndexOutOfBoundsException: Index: 6, Size: 6 at java.util.ArrayList.rangeCheck(ArrayList.java:635) at java.util.ArrayList.get(ArrayList.java:411) at edu.cmu.lti.deiis.hw5.answer_ranking.AnswerChoiceCandAnsSimilarityScorer.reconstruct(AnswerChoiceCandAnsSimilarityScorer.java:208) at edu.cmu.lti.deiis.hw5.answer_ranking.AnswerChoiceCandAnsSimilarityScorer.process(AnswerChoiceCandAnsSimilarityScorer.java:60) at org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:375) ... 8 more Nov 11, 2013 8:00:22 PM org.apache.uima.collection.impl.cpm.engine.ProcessingUnit process SEVERE: The container CpeQuestionDescriptor returned the following error message: Annotator processing failed. (Thread Name: [Procesing Pipeline#1 Thread]::) Nov 11, 2013 8:00:22 PM org.apache.uima.collection.impl.cpm.engine.ProcessingUnit maybeLogSevereException(2502) SEVERE: Thread: [Procesing Pipeline#1 Thread]::, message: Annotator processing failed.
org.apache.uima.analysis_engine.AnalysisEngineProcessException: Annotator processing failed.
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:391) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:296) at org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.processUntilNextOutputCas(ASB_impl.java:567) at org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.(ASB_impl.java:409) at org.apache.uima.analysis_engine.asb.impl.ASB_impl.process(ASB_impl.java:342) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.processAndOutputNewCASes(AggregateAnalysisEngine_impl.java:267) at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:267) at org.apache.uima.collection.impl.cpm.engine.ProcessingUnit.processNext(ProcessingUnit.java:897) at org.apache.uima.collection.impl.cpm.engine.ProcessingUnit.run(ProcessingUnit.java:577) Caused by: java.lang.IndexOutOfBoundsException: Index: 6, Size: 6 at java.util.ArrayList.rangeCheck(ArrayList.java:635) at java.util.ArrayList.get(ArrayList.java:411) at edu.cmu.lti.deiis.hw5.answer_ranking.AnswerChoiceCandAnsSimilarityScorer.reconstruct(AnswerChoiceCandAnsSimilarityScorer.java:208) at edu.cmu.lti.deiis.hw5.answer_ranking.AnswerChoiceCandAnsSimilarityScorer.process(AnswerChoiceCandAnsSimilarityScorer.java:60) at org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:375) ... 8 more

org.apache.uima.analysis_engine.AnalysisEngineProcessException: Annotator processing failed.
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:391) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:296) at org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.processUntilNextOutputCas(ASB_impl.java:567) at org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.(ASB_impl.java:409) at org.apache.uima.analysis_engine.asb.impl.ASB_impl.process(ASB_impl.java:342) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.processAndOutputNewCASes(AggregateAnalysisEngine_impl.java:267) at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:267) at org.apache.uima.collection.impl.cpm.engine.ProcessingUnit.processNext(ProcessingUnit.java:897) at org.apache.uima.collection.impl.cpm.engine.ProcessingUnit.run(ProcessingUnit.java:577) Caused by: java.lang.IndexOutOfBoundsException: Index: 6, Size: 6 at java.util.ArrayList.rangeCheck(ArrayList.java:635) at java.util.ArrayList.get(ArrayList.java:411) at edu.cmu.lti.deiis.hw5.answer_ranking.AnswerChoiceCandAnsSimilarityScorer.reconstruct(AnswerChoiceCandAnsSimilarityScorer.java:208) at edu.cmu.lti.deiis.hw5.answer_ranking.AnswerChoiceCandAnsSimilarityScorer.process(AnswerChoiceCandAnsSimilarityScorer.java:60) at org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:375) ... 8 more Nov 11, 2013 8:00:22 PM org.apache.uima.collection.impl.cpm.container.ProcessingContainer_Impl process SEVERE: The CPM stopped because the configured error threshold 0 was exceeded. (Thread Name: [Procesing Pipeline#1 Thread]::) Component Name: CpeQuestionDescriptor Nov 11, 2013 8:00:22 PM org.apache.uima.collection.impl.cpm.engine.ProcessingUnit process SEVERE: The CPM is terminating. The current component is CpeQuestionDescriptor. (Thread Name: [Procesing Pipeline#1 Thread]::) Nov 11, 2013 8:00:22 PM org.apache.uima.collection.impl.cpm.engine.ProcessingUnit process WARNING: The CPM cannot be stopped by force. The current container is CpeQuestionDescriptor. (Thread Name: [Procesing Pipeline#1 Thread]::) Reason: The CAS processor CpeQuestionDescriptor is configured to stop the CPM when excessive errors are encountered. (Thread Name: [Procesing Pipeline#1 Thread]::) Nov 11, 2013 8:00:22 PM org.apache.uima.collection.impl.cpm.engine.ProcessingUnit maybeLogSevereException(2502) SEVERE: Thread: [Procesing Pipeline#1 Thread]::, message: org.apache.uima.collection.base_cpm.AbortCPMException: at org.apache.uima.collection.impl.cpm.container.ProcessingContainer_Impl.incrementCasProcessorErrors(ProcessingContainer_Impl.java:804) at org.apache.uima.collection.impl.cpm.engine.ProcessingUnit.processNext(ProcessingUnit.java:1041) at org.apache.uima.collection.impl.cpm.engine.ProcessingUnit.run(ProcessingUnit.java:577)