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Dill-PICL / GOMAP-Paper-2019.1

Data, code, and results for our paper Standardized genome-wide function prediction enables comparative functional genomics: a new application area for Gene Ontologies in plants (https://doi.org/10.1093/gigascience/giac023). If you use any of our code or results in a scientific publication, we would be grateful if you cite the paper.
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Containerize this #36

Closed Thyra closed 2 years ago

Thyra commented 5 years ago

It will be a pain for people who want to reproduce our results to set up all the software required, so Carla had the idea to containerize it. Do we want to do that? How?

Thyra commented 5 years ago

Use Singularity, it's amazing! Keep data and stuff out of the container and put the container file which only supplies required software (crystal, R...) in the root folder of this github. Then tell the user to launch it from there so all the data etc will be automatically available from within the container and generated reports etc will be accessible from outside the container. Tadaaa!

Thyra commented 2 years ago

done