Closed rwbaer closed 2 years ago
@rwbaer, thanks for reporting this. Looks like a bug in cyto_compensate()
- it is expecting your spillover matrix to contain all the flourescent channels in your samples. I will push a fix later today.
@rwbaer, this should now be fixed.
Please pull down the latest version from GitHub and try again:
devtools::install_github("DillonHammill/CytoExploreR")
This seems to be working now. Thanks.
Briefly describe what you hope to achieve: -I'm trying to apply a 2 channel compensation to a gating set
Outline the steps taken to attempt to reach this goal (paste code below): The spill matrix was created in separate source file and save in Spillover-Matrix.csv
I then created a gating set and tried to apply the compensation, but got an undefined column error that I don't understand.
The resulting console output and error is shown below. Not sure where I'm going wrong. Include any associated screenshots or images here:![console](https://user-images.githubusercontent.com/3155051/141491674-dc24ade5-a375-43b4-9ace-04cf34afa278.png)