Open simonuoft opened 2 years ago
@simonuoft, you have replaced the names in the correct way. The problem is that after changing the names cyto_names()
becomes out of sync with the uri
of the cytoframes - I have addressed this problem in version 2.0.0 of CytoExploreR which is around the corner.
In the meantime, I would recommend writing the FCS files with the desired names and then read them back into CytoExploreR, then everything should be in sync again.
# Replace names
cyto_names(data) <- c("x.fcs", "y.fcs", "z.fcs")
# Write new FCS files
cyto_save(
data,
parent = "root",
save_as = "Renamed-FCS-Files",
names = c("x.fcs", "y.fcs","z.fcs"),
inverse = TRUE
)
# Reload new FCS files
data <- cyto_setup("Renamed-FCS-Files")
Tip: you can also save the entire GatingSet using cyto_save()
just leave out the parent
argument. This saved GatingSet retains all your analyses and can be reloaded using cyto_setup()
as above.
Hi, I would like to rename files but didn't find the proper way to do it.
I have a list of around 30 *.fcs files named sample1, sample2, sample3 etc... I created a gattingset containing all the files using the cyto_setup function. then I tried to apply this code :
That works and change the names (if i type cyto_names(data) i see the names have been modified) However then when I try to plot or draw gate I got error such as : Error in .cpp_getNodes(x@pointer, sampleNames(x)[1], as.integer(orderInd), : NA not found! or Error : Subset out of bounds
Any inputs/idea about what I'm doing wrong ? Thanks in advance