Closed liamg15 closed 2 years ago
@liamg15, that is not an error but instead instructions on how to gate. Rmarkdown is designed to be non-interactive so you need to run the code from a traditional R script. The plot should open in a popup window and you can draw your gates in that window.
Also, there is no need to pull the data out before calling cyto_gate_draw()
, just give it your GatingSet.
I plan to draw any form of gate around my data. First time using this package and want to practice with all gating options. When I run
cyto_gate_draw
below, I get an error saying:Select the upper bound of the Cells population to construct a boundary gate. Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array extent
Looks like I don't have the option to manually draw gates around populations as there is no popup even with
popup = TRUE
. Could this be an issue with Shiny? Do I need to run this code in ShinyApp?Here is my code: