So I am trying to conceive a UI for a collection of cytometry packages including CytoExploreR and most notably for the cyto_draw_gate() function which is really intuitive and easy to use.
Just the issue that I am running to is that the plot is being done on a pop up window which is not an issue when working on my local pc, but when integrating the code into a R-studio session on ubuntu server the plot will just not show (and rightfully so) which blocks the program.
So the solution will be to integrate the plot in a renderPlot space in the shiny UI.
Codes showing the renders:
##Rendering the whole gating scheme works
output$gating_scheme <- renderPlot({
cyto_plot_gating_scheme(values$gs)
})
##Rendering the cyto_draw_gate() plot will not work
output$gate_draw<- renderPlot({
cyto_gate_draw(
values$gs,
parent = input$parent,
alias = c(values$marker1, values$marker2, values$marker3),
channels = c(input$x.axis, input$y.axis),
type = input$type,
negate = FALSE
)
})
With the following warning:
(Warning: Error in strsplit: non-character argument)
I think perhaps somewhere in the package I should modify something to indicate that the plot should be done on Shiny? Or Shiny isn't able to plot these types of graphics (which seems not plausible)? I see that cyto_draw_gate calls for cyto_plot and many other functions, but I don't seem to find the part that takes care of that.
Screenshots showing the two types of plots on local PC:
I would recommend waiting for the release of version 2.0.0 of CytoExploreR, it has significant changes including improvements to compatibility with shiny.
Good afternoon everyone,
So I am trying to conceive a UI for a collection of cytometry packages including CytoExploreR and most notably for the cyto_draw_gate() function which is really intuitive and easy to use.
Just the issue that I am running to is that the plot is being done on a pop up window which is not an issue when working on my local pc, but when integrating the code into a R-studio session on ubuntu server the plot will just not show (and rightfully so) which blocks the program. So the solution will be to integrate the plot in a renderPlot space in the shiny UI.
Codes showing the renders:
With the following warning: (Warning: Error in strsplit: non-character argument)
I think perhaps somewhere in the package I should modify something to indicate that the plot should be done on Shiny? Or Shiny isn't able to plot these types of graphics (which seems not plausible)? I see that cyto_draw_gate calls for cyto_plot and many other functions, but I don't seem to find the part that takes care of that. Screenshots showing the two types of plots on local PC:
![plot](https://user-images.githubusercontent.com/74742818/165781119-febc1693-193e-4733-99c9-62d87a80a907.PNG)
Thanks a lot for your help.