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DillonHammill / CytoExploreR

Interactive Cytometry Data Analysis
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error installing #148

Closed baj12 closed 2 years ago

baj12 commented 2 years ago

Describe the bug doesn't install

To Reproduce R CMD INSTALL --no-multiarch --with-keep.source CytoExploreR

Expected behavior An updated CytoExploreR

And by the way, thanks for all your great work!!!

Screenshots

* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’
* installing *source* package ‘CytoExploreR’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Warning message:
replacing previous import ‘flowViz::contour’ by ‘graphics::contour’ when loading ‘flowStats’ 
Error: object ‘CytoExploreR_.preprocess_row’ is not exported by 'namespace:openCyto'
Execution halted
ERROR: lazy loading failed for package ‘CytoExploreR’
* removing ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library/CytoExploreR’
* restoring previous ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library/CytoExploreR’

Desktop (please complete the following information):

baj12 commented 2 years ago

Just digging through the code and found that this is related to openCyto. I am using openCyto_2.5.4

DillonHammill commented 2 years ago

You need to install my fork of openCyto:

devtools::install_github("DillonHammill/openCyto")
baj12 commented 2 years ago

Yes that works. thanks, maybe that could included in the install instructions.

DillonHammill commented 2 years ago

You should only need that for the devel version which has still matured enough for public release (currently undergoing extensive and frequent changes). You will need to stick to the master branch for now.