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DillonHammill / CytoExploreR

Interactive Cytometry Data Analysis
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Error when trying to install cytoverse packages #179

Closed ghar1821 closed 1 year ago

ghar1821 commented 1 year ago

Describe the bug Cannot install cytoverse using cytoinstaller::install_cyto(bioc_ver = "devel"), as specified in the installation guide.

I cannot install cytoverse using the cytoinstaller package. I'm not quite sure why cytoverse is required as when I tried to install CytoExploreR, it only requires me to install opencyto from Bioconductor, which I managed to do.

To Reproduce Steps to reproduce the behavior: Run the command cytoinstaller::install_cyto(bioc_ver = "devel"). Instead of having cytoverse installed, the following error came up:

Error in cyto_pkg_github_url(pkg, owner, ...) : 
  Error in gh_process_response(raw) : 
  GitHub API error (404): Not Found
✖ URL not found: <https://api.github.com/repos/RGLab/COMPASS/releases/tags/bioc_3.17>
ℹ Read more at <https://docs.github.com/rest/reference/repos#get-a-release-by-tag-name>

Screenshots

image

Desktop (please complete the following information): Mac. R 4.2.2 arm64

DillonHammill commented 1 year ago

All cytoverse packages including cytolib, flowCore, flwoWorkspace and openCyto are dependencies of CytoExploreR. You can simply install them from BioC now - development versions from GitHub are no longer required. 

BiocManager::install(c("cytolib", "flowCore", "openCyto", "flowWorkspace"))

The docs will be updated soon with the release of CytoExploreR v2.0.0.

ghar1821 commented 1 year ago

I see. Thanks @DillonHammill. Looking forward to v2.0!