DillonHammill / CytoExploreR

Interactive Cytometry Data Analysis
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cyto_spillover_compute: 3 arguments passed to .Internal(unlink) which requires 4 #18

Closed hally166 closed 4 years ago

hally166 commented 4 years ago

I am getting this error when computing spillover with both cytoExploreRData data and my own data. I'm not sure why. The plotting, gating, and generated % seems to work, but it fails at the last step.

> spill <- cyto_spillover_compute(gs,
+                                 parent = "Single Cells",
+                                 spillover = "Spillover-Matrix.csv")
Select a fluorescent channel for the following sample:
Compensation Controls_APC-Cy7 Stained Control.fcs
Compensation Controls_APC Stained Control.fcs
Compensation Controls_FITC Stained Control.fcs
Compensation Controls_Pacific Blue Stained Control.fcs
Compensation Controls_PE-Cy7 Stained Control.fcs
Compensation Controls_PE Stained Control.fcs
Compensation Controls_PerCP-Cy5-5 Stained Control.fcs
Select the lower and upper bounds of the APC-Cy7-A- population to construct an interval gate. 

Select the lower and upper bounds of the APC-Cy7-A+ population to construct an interval gate. 

Select the lower and upper bounds of the APC-A- population to construct an interval gate. 

Select the lower and upper bounds of the APC-A+ population to construct an interval gate. 

Select the lower and upper bounds of the FITC-A- population to construct an interval gate. 

Select the lower and upper bounds of the FITC-A+ population to construct an interval gate. 

Select the lower and upper bounds of the Pacific Blue-A- population to construct an interval gate. 

Select the lower and upper bounds of the Pacific Blue-A+ population to construct an interval gate. 

Select the lower and upper bounds of the PE-Cy7-A- population to construct an interval gate. 

Select the lower and upper bounds of the PE-Cy7-A+ population to construct an interval gate. 

Select the lower and upper bounds of the PE-A- population to construct an interval gate. 

Select the lower and upper bounds of the PE-A+ population to construct an interval gate. 

Select the lower and upper bounds of the PerCP-Cy5-5-A- population to construct an interval gate. 

Select the lower and upper bounds of the PerCP-Cy5-5-A+ population to construct an interval gate. 

Error in unlink(tmp, recursive = TRUE) : 
  3 arguments passed to .Internal(unlink) which requires 4
hally166 commented 4 years ago

This appears to now be fixed.