Open kjen02 opened 1 year ago
I am attempting to plot my gating scheme. However, while using cyto_plot_gating_scheme, the process aborts after either 4 or 5 plots with the error:
Error in if (channels[1] == channels[2] | (!.empty(channels[1]) & .empty(channels[2]))) { : missing value where TRUE/FALSE needed
I have two activation gating data sets, and this issue is reproducible across both sets of data.
gs <- cyto_setup("ActivationSet1", gatingTemplate = "ActivationSet1-gatingTemplate.csv") gs <- cyto_compensate(gs, spillover = "Spillover-Matrix.csv") gs <- cyto_transform(gs) cyto_gatingTemplate_apply(gs, "ActivationSet1-gatingTemplate.csv") cyto_plot_gating_scheme(gs)
After running cyto_plot_gating_scheme(gs), it aborts after plotting the gates in the first attached image with the error listed above. However, I have more gates that need to be plotted, as seen in the gating tree.
I am attempting to plot my gating scheme. However, while using cyto_plot_gating_scheme, the process aborts after either 4 or 5 plots with the error:
Error in if (channels[1] == channels[2] | (!.empty(channels[1]) & .empty(channels[2]))) { : missing value where TRUE/FALSE needed
I have two activation gating data sets, and this issue is reproducible across both sets of data.
After running cyto_plot_gating_scheme(gs), it aborts after plotting the gates in the first attached image with the error listed above. However, I have more gates that need to be plotted, as seen in the gating tree.