DiltheyLab / HLA-LA

Fast HLA type inference from whole-genome data
GNU General Public License v3.0
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high memory consumption from unused code #111

Open suhrig opened 5 months ago

suhrig commented 5 months ago

This PR removed a few lines of code which apparently are not used anywhere, but which consume tons of memory. HLA-LA was reproducibly killed on my 256GB machine due to maxing out the memory. With the lines removed, it only consumes ~80GB. The results from the test sample are identical, confirming that the removed code is indeed superfluous.

serge2016 commented 5 months ago

Sounds great!