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DiltheyLab / HLA-LA

Fast HLA type inference from whole-genome data
GNU General Public License v3.0
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Typing of HLA-DP Locus #43

Closed tinyheero closed 4 years ago

tinyheero commented 4 years ago

Hi there,

Thanks for this tool. Is it possible to use HLA*LA to type the HLA-DP locus? When I was reading the paper (https://academic.oup.com/bioinformatics/article/35/21/4394/5426702), I didn't see any mention of the HLA-DP locus in any of the results/benchmarking.

Kind regards,

Fong

AlexanderDilthey commented 4 years ago

Hi Fong,

Yes - by default you get genotypes for the following HLA loci:

A B C DQA1 DQB1 DRB1 DPA1 DPB1 DRA DRB3 DRB4 E F G H K V

Best,

Alex

Von: Fong Chun Chan notifications@github.com Gesendet: Mittwoch, 22. Juli 2020 14:05 An: DiltheyLab/HLA-LA HLA-LA@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Betreff: [DiltheyLab/HLA-LA] Typing of HLA-DP Locus (#43)

Hi there,

Thanks for this tool. Is it possible to use HLA*LA to type the HLA-DP locus? When I was reading the paper (https://academic.oup.com/bioinformatics/article/35/21/4394/5426702), I didn't see any mention of the HLA-DP locus in any of the results/benchmarking.

Kind regards,

Fong

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