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DiltheyLab / HLA-LA

Fast HLA type inference from whole-genome data
GNU General Public License v3.0
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prepate graph #51

Open allteaser opened 3 years ago

allteaser commented 3 years ago

I downloaded the docker file and incorporated the commands for downloading the tar file, untar and prepare the index I got the following error prepareGraph [ Wed Oct 14 16:16:25 2020 ] Read graph from /usr/local/bin/HLA-LA/graphs/PRG_MHC_GRCh38_withIMGT 30400000Killed The command '/bin/sh -c /usr/local/bin/HLA-LA/bin/HLA-LA --action prepareGraph --PRG_graph_dir /usr/local/bin/HLA-LA/graphs/PRG_MHC_GRCh38_withIMGT' returned a non-zero code: 137

AlexanderDilthey commented 11 months ago

Hi @allteaser,

This is most likely due to memory constraints.

Best,

Alex