How to update PRG_MHC_GRCh38_withIMGT data package?

DiltheyLab / HLA-LA

Fast HLA type inference from whole-genome data

GNU General Public License v3.0

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How to update PRG_MHC_GRCh38_withIMGT data package? #68

Open TonyLupara opened 2 years ago

TonyLupara commented 2 years ago

How can I update PRG_MHC_GRCh38_withIMGT data package? I want to change graph to new version of IPD-IMGT/HLA database and leave in graph only alleles with complete CDS.

serge2016 commented 2 years ago

Same here!

jbethune commented 2 years ago

Similar here. The instructions in Update graphs.txt refer to files that are not part of this repository.

Many thanks for HLA-LA! This is a nice software.

Rashesh7 commented 2 years ago

Hi, Same here. I want to update the PRG package to the latest version of IMGT/HLA database. Can you please provide the steps to do this?

Many Thanks.

AlexanderDilthey commented 11 months ago

Hello everyone,

To provide an update on the situation, I have not found the time yet to update the graph to a new version of the IMGT database and it is not clear if / when that will happen.

Best wishes,

Alex