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DiltheyLab / HLA-LA

Fast HLA type inference from whole-genome data
GNU General Public License v3.0
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remove unnecessary db:HTS module #75

Closed irunonayran closed 2 years ago

dlaehnemann commented 2 years ago

@AlexanderDilthey Could you create a new release with this dependency removed? This would solve a problem when packaging HLA-LA for bioconda, see this error:

2022-06-23T19:31:19.9394901Z 19:31:19 BIOCONDA INFO (ERR) [Jun 23 19:31:19] SERR Can't locate Bio/DB/HTS.pm in @INC (you may need to install the Bio::DB::HTS module) (@INC contains: /usr/local/lib/perl5/5.32/site_perl /usr/local/lib/perl5/site_perl /usr/local/lib/perl5/5.32/vendor_perl /usr/local/lib/perl5/vendor_perl /usr/local/lib/perl5/5.32/core_perl /usr/local/lib/perl5/core_perl . /usr/local/bin /usr/local/opt/hla-la/src) at /usr/local/bin/HLA-ASM.pl line 29.
2022-06-23T19:31:19.9396676Z INFO:bioconda_utils.utils:(ERR) [Jun 23 19:31:19] SERR BEGIN failed--compilation aborted at /usr/local/bin/HLA-ASM.pl line 29.

It occurs in the PR to update the HLA-LA bioconda recipe to v1.0.2.

AlexanderDilthey commented 2 years ago

Done.