Inconsistent need for hla_nom_g.txt?

DiltheyLab / HLA-LA

Fast HLA type inference from whole-genome data

GNU General Public License v3.0

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Inconsistent need for hla_nom_g.txt? #81

Closed jfass closed 1 year ago

jfass commented 2 years ago

I'm using HLA*LA 1.0.1 installed in a conda environment. Out of quite a few samples analyzed, both whole exome and RNA-Seq, I'm seeing two samples that fail, and in at least one of those cases, it quits after not being able to find hla_nom_g.txt in the conda src folder. I'm testing again after adding to the path, but why the inconsistent need?

AlexanderDilthey commented 1 year ago

Hi @jfass,

The file is always required. I do not know what causes the behaviour you observed.

Best -Alex