search

DiltheyLab / HLA-LA

Fast HLA type inference from whole-genome data
GNU General Public License v3.0
120 stars 40 forks source link

haplotypes #95

Closed afadda1 closed 11 months ago

afadda1 commented 1 year ago

hi again, does it correctly assign alleles to chromosomes? can haplotypes be identified based on its results?

thanks a lot

AlexanderDilthey commented 11 months ago

Hi @afadda1,

No, HLA*LA will not infer inter-locus haplotypes. In the output files, the value assigned to Chromosome is arbitrary.

Best,

Alex