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DiltheyLab / HLA-LA

Fast HLA type inference from whole-genome data
GNU General Public License v3.0
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HLA-LA file format conversion #97

Open Sahu-Mousumi opened 1 year ago

Sahu-Mousumi commented 1 year ago

Hi! I was wondering if anyone can suggest a tool to convert HLA-LA result text files into VCF/PLINK/SNP2HLA format.

Thanks!

AlexanderDilthey commented 1 year ago

Not something we have available or are working on, but leaving this open in case anyone has any suggestions!

-Alex

LiuYunjia commented 1 year ago

Hi, have you solved this problem? I wanna convert the results into VCF format too.

Sahu-Mousumi commented 1 year ago

Hi! Yes, I had to make .lgen, .map and .fam plink files from hla-la text file and then subsequently able to convert those into vcf.

Thanks

On Thu, Jul 27, 2023, 4:03 AM LiuYunjia @.***> wrote:

Hi, have you solved this problem? I wanna convert the results into VCF format too.

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