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DiltheyLab / MetaMaps

Long-read metagenomic analysis
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Extracting all representative and reference genomes from GenBank and put it into DB. #28

Closed ms-gx closed 4 years ago

ms-gx commented 4 years ago

I would like to make a very extensive ref. DB for MetaMaps.

Ideally I take all genomes with RefSeq category reference genome and representative genome so that I have one genome per Species.

What are your thoughts? Is this pure madness or do you think this should work on a decent compute infrastructure?

Any thoughts on how to optimize this?

AlexanderDilthey commented 4 years ago

I think we discussed this during our call. Feel free to re-open if any further questions arise.