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DiltheyLab / MetaMaps

Long-read metagenomic analysis
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Error: cannot open file 'plotIdentities_EM.R': No such file or directory #39

Closed tanushrin closed 12 months ago

tanushrin commented 4 years ago

Hi, I would like to plot the classification results. However, the below command results in error. Rscript plotIdentities_EM.R classification_results Fatal error: cannot open file 'plotIdentities_EM.R': No such file or directory

I checked in the repo and couldn't find the script plotIdentities_EM.R. Could you kindly guide me how to resolve the issue?

Also, would like to ask if MetaMaps has compatibility with Pavian(like Kraken, Centrifuge reports) for visualization of the classification.

Thank you in advance!!

aditi48n commented 2 years ago

Hello,

I had this error too. @AlexanderDilthey @froggleston @cjain7 could you please guide us on how to resolve the issue.

Thank you in advance.

AlexanderDilthey commented 12 months ago

Hi @tanushrin and @aditi48n,

Sorry, the file was not present in the repository. This is now fixed.

Best wishes

Alex