DiltheyLab / MetaMaps

Long-read metagenomic analysis
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downloadRefSeq.pl fails with error message #43

Open cpockrandt opened 4 years ago

cpockrandt commented 4 years ago

Hi,

I am running the following command from the README to build a database with bacteria from RefSeq:

perl downloadRefSeq.pl --DB refseq --seqencesOutDirectory download/refseq --taxonomyOutDirectory download/taxonomy --targetBranches bacteria --skipIncompleteGenomes 1

It downloads thousands of genomes and then suddenly exits with Can't use an undefined value as a symbol reference at /usr/share/perl5/Net/FTP/dataconn.pm line 54.

I have tried it multiple times but if always fails at some point.