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DiogoVeiga / maser

Mapping Alternative Splicing Events to pRoteins
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maser error when creating maser object #12

Closed jbubenik closed 6 years ago

jbubenik commented 6 years ago

Hi Diogo, It seems that the column names in rMATS4 output files are not the same as is the example file ( IJC vs IC and SJC vs SC). This is causing the following error : Error in '[.data.frame'(events, , counts.col[1]) : undefined columns selected. When I change the name of my columns to match the example file everything is fine. It would be great if you could change the code to accept the IJC and SJC labels as well. Thanks

Jodi

DiogoVeiga commented 6 years ago

Hi Jodi,

Thanks, I will fix the code for reading rMATS4 input files.

DiogoVeiga commented 6 years ago

Hi @jbubenik ,

I released a new version on Github to fix this problem. To create a maser object from rMATS versions >4.0.1, set the ftype argument to "JCEC" or "JC".

devtools::install_github("DiogoVeiga/maser") maser(path, c("cond.A", "cond.B"), ftype = "JCEC")