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DiogoVeiga / maser

Mapping Alternative Splicing Events to pRoteins
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plotTranscripts subscript out of bounds error #27

Open jlac opened 3 years ago

jlac commented 3 years ago

Hi,

I am attempting to plot intron retention difference for a specific genes from an rMATs (4.1.0) run, and keep getting the following error when I run plotTranscripts:

Dicer_KO_vs_WT <- maser(path = "/Users/lackjb/Desktop/active_projects/RBL-3/rmats/Dicer_KO",ftype = "JC",cond_labels = c("Dicer_KO","WT")) CSNK2B<-geneEvents(Dicer_KO_vs_WT,geneS="CSNK2B",fdr = 0.05,deltaPSI = 0.1) ens_gtf <- rtracklayer::import.gff3("/Users/lackjb/Desktop/gencode.v27.annotation.gff3") plotTranscripts(CSNK2B,type = "RI",event_id = 21543,gtf = ens_gtf, zoom = FALSE) Error in blist.conf[, 2] : subscript out of bounds

Any idea what might be going on? I have tried multiple transcriptome versions, and have gotten nowhere. Thank you in advance for your help.

Best,

Justin

Sumithrasank commented 3 years ago

I am having this exact error. Following this thread