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Discngine / fpocket

fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level. fpocket is distributed as free open source software. If you are interested in integrating fpocket in an industrial setting and require official support, please contact Discngine (www.discngine.com).
MIT License
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Specify output directory with fpocket. #104

Open egurapha opened 1 year ago

egurapha commented 1 year ago

For tpocket and dpocket it seems like I can specify a custom output directory by appending a prefix with the "-o" flag. This doesn't seem to exist as an option for fpocket. Is there some way to specify the output directory with fpocket?

Also is there some way to suppress the file writing, and just use the -d flag to print to stdout?

Thanks!

pschmidtke commented 11 months ago

Hi,

indeed that's not possible, but not too complicated to add. Same for the -d not writing output files (but on my side I'd need them), so it"d be an additional flag requesting not to write explicitly instead. I'll add that request to a later release. Peter