Segmentation fault error with -P flag

Discngine / fpocket

fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level. fpocket is distributed as free open source software. If you are interested in integrating fpocket in an industrial setting and require official support, please contact Discngine (www.discngine.com).

MIT License

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Segmentation fault error with -P flag #105

Closed tugceoruc closed 7 months ago

tugceoruc commented 1 year ago

When I try to use -P flag I get the segmentation fault error.

I installed from conda via: conda install -c conda-forge fpocket=4.1

To reproduce: fpocket -f 6g2o.pdb -P 278:-:A.281:-:A.282:-:A

oriondollar commented 11 months ago

i'm having the same problem. would love some clarification on this.

DAlvGar commented 10 months ago

I came across the same problem and it took me a loooooong time to figure out and fix it:

modify line 50 of the makefile and instead of using -std=c99 flag, use -std=gnu99

I am working on OpenSuse 15.5 and gcc 7.5.0. I hope it helps others! I am not sure how generic and back-compatible this is to change the repository code.

pschmidtke commented 8 months ago

oh, compilation crap probably, will add it to my list of things to do.

pschmidtke commented 7 months ago

Adressed & merged https://github.com/Discngine/fpocket/pull/117