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Discngine / fpocket

fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level. fpocket is distributed as free open source software. If you are interested in integrating fpocket in an industrial setting and require official support, please contact Discngine (www.discngine.com).
MIT License
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Problems with the size of the input file name #130

Closed aguus8 closed 4 months ago

aguus8 commented 5 months ago

Hello,

I'm having problems with the length size of the input file's name. When it is longer than many characters (I can't say the exact amount), this error appears:

"malloc(): corrupted top size"

currently, I solve this error by giving as input the relative path instead the absolute path (which is shorter). The version of fpocket that I'm using is: 3.1.4.2

Thanks in advance

Agustín

pschmidtke commented 4 months ago

fixed in 4.1.3

aguus8 commented 4 months ago

thank u very much!

dgozgulbas commented 2 months ago

Hello,

I am getting the same "malloc(): corrupted top size" error due to input directory length for mdpocket while using the latest fpocket version 4.2. Can you help me with this?

Thank you, Defne