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Discngine / fpocket

fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level. fpocket is distributed as free open source software. If you are interested in integrating fpocket in an industrial setting and require official support, please contact Discngine (www.discngine.com).
MIT License
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malloc failed — fpocket 4.0 on Mac (OS X ventura, Intel iMac, 32GB) #137

Closed drawoliver closed 3 months ago

drawoliver commented 3 months ago

When I try and run fpocket on a PDB file, it produces the following error —

POCKET HUNTING BEGINS ! malloc failed in my_bloc_malloc. Programm will exit, as demanded.

This is with the program compiled from the Git source code, or installed via Conda

Any ideas how to solve?

pschmidtke commented 3 months ago

Did you try with the latest release ?

pschmidtke commented 3 months ago

Tested on ventura 13.6.1 2,3 GHz Dual-Core Intel Core i5 with clang :

Apple clang version 11.0.0 (clang-1100.0.33.17)
Target: x86_64-apple-darwin22.6.0
Thread model: posix
InstalledDir: /Library/Developer/CommandLineTools/usr/bin