DiscoveryDNA map_motif issues

DiscoveryDNA / map_motif

Map frequency matrices on sequence alignments.

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issues

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map_motif.py table output to .csv

#30 iamciera opened 6 years ago
0
updated README.md

#29 iamciera closed 6 years ago
0
organized code folder and seperated D3 code

#28 iamciera closed 6 years ago
0
moved example data folders into data

#27 iamciera closed 6 years ago
0
For command line version: update new features.

#26 iamciera opened 6 years ago
0
Optional Argument Proper Syntax?

#25 iamciera opened 6 years ago
0
File input for Jupyter Notebook

#24 iamciera opened 6 years ago
0
Redundant files and organization

#23 iamciera opened 6 years ago
0
adding status update print statements

#22 IsaakCagampangHeller closed 6 years ago
0
Fixed stripplot to use aligned vs raw position

#21 jshi1010 closed 6 years ago
0
Added in stripplot visualization & example output

#20 jshi1010 closed 6 years ago
1
New Request for Flexbox Intro

#19 alexnakagawa closed 6 years ago
0
Removed dashes from outputted df

#18 jshi1010 closed 6 years ago
0
Added in interval extraction from raw sequences

#17 jshi1010 closed 6 years ago
0
updates readme for new argument

#16 IsaakCagampangHeller closed 6 years ago
0
added an optional threshold argument

#15 IsaakCagampangHeller closed 6 years ago
0
moved and reformatted mapping_motif jupyter notebook for new directory

#14 alexnakagawa closed 6 years ago
0
It would be great to make this a python package rather that a script that is run from command line.

#13 iamciera opened 6 years ago
2
Read through code and see how to make more efficient and more pythonic.

#12 iamciera closed 6 years ago
0
making a loop not hardcoded

#11 IsaakCagampangHeller closed 6 years ago
0
a lot of the data frames have columns where the same piece of text is fills the whole column. Would it be more efficient if we stored it in one place instead of for every column in the data frame?

#10 IsaakCagampangHeller closed 6 years ago
1
Add print statements.

#9 iamciera opened 6 years ago
1
clarification of line

#8 IsaakCagampangHeller closed 6 years ago
1
made notes and converted to python 3

#7 IsaakCagampangHeller closed 6 years ago
1
set threshold

#6 IsaakCagampangHeller closed 6 years ago
2
Make map_motif.py script into Python 3 compatible

#5 iamciera closed 6 years ago
0
Make tools to convert PWM

#4 iamciera opened 6 years ago
0
Add visualization

#3 iamciera opened 6 years ago
1
Read in only one raw sequence option

#2 iamciera closed 6 years ago
3
Line 92 Cannot be hardcoded

#1 iamciera closed 6 years ago
2