June 16 - review - Githubissues

DiscoveryDNA / reading_czi_stack_videos_GH

exploring czi visualization

0 stars 1 forks source link

June 16 - review #3

Open iamciera opened 4 years ago

iamciera commented 4 years ago

In Tutorial_6.ipynb

High Priority

[ ] Using cluster to identify nuclei centers, clarify this part
- [ ] Just get unique coordinates, do we need this clustering part, if yes, then explain better.
[ ] Check if outliers are really there by eye. Zoom in on the outliers and just visually check.

Low Priority

[ ] Dealing with edges over time
[ ] Check if the centers are called at each time point
- [ ] Check if nuclei change over time.

8_testingStacks_ST.ipynb

Go over with specified example and tweek parameters to see if you can get to work.