Random PWM generator and dataset

DiscoveryDNA / team_neural_network

Neural Network of enhancer regions

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Open iamciera opened 5 years ago

iamciera commented 5 years ago

Generate Code - done. See https://github.com/DiscoveryDNA/team_neural_network/blob/master/code/utility/Random_PWM_Generator.ipynb
Run 4 random PWM on original sequences to get new dataset - @iamciera
Format the new dataset - @Jesseswoo
Run through bidirectional LSTM architecture. This acts as a negative control. This should yield a lower accuracy score.

iamciera commented 5 years ago

Great start. Excited to run new experiments with this! @Jesseswoo can you do the below tasks:

[x] Make new PWM of length 8,9,6,6. I will start making the new data from that ASAP
[x] Move all your code and associated files to a new repo: [https://github.com/DiscoveryDNA/random_pwm_generator](Hey @Jesse Woo, Can you make four new random PWM? Length 8,9,6,6. I will start making the new data from that ASAP
[x] Delete all the files that are associated from team_neural_network