DiseaseOntology / HumanDiseaseOntology

Repository for the Human Disease Ontology.
Creative Commons Zero v1.0 Universal
347 stars 108 forks source link

New term request: DeSanto-Shinawi syndrome #1061

Closed vjenkinsFB closed 2 years ago

vjenkinsFB commented 2 years ago

I'd like to request a term for DeSanto-Shinawi syndrome:

OMIM: https://omim.org/entry/616708

Potential definition: DeSanto-Shinawi syndrome is a neurodevelopmental disorder [could put more detail here] that has_material_basis_in heterozygous mutation of the WAC gene on chromosome 10p11.

Potential parent term: autosomal dominant disease

Synonyms: DESSH, WAC syndrome, Facial dysmorphism-developmental delay-behavioral abnormalities syndrome due to WAC point mutation, WAC-Related Intellectual Disability

Two MedGen pages: Facial dysmorphism-developmental delay-behavioral abnormalities syndrome due to WAC point mutation(DESSH) linked to the original paper & the OMIM. ClinVar largely links pathogenic alleles of WAC to this disease. WAC-related facial dysmorphism-developmental delay-behavioral abnormalities syndrome linked to a different presentation of the disease, same gene of interest, found by PMID 34997803 which emphasizes cardiac defects not found by the original paper.

GeneReviews page: WAC-Related Intellectual Disability HGNC entry for gene WAC

Citations other than those in the OMIM entry: PMID 34997803 - Congenital heart defects associated with pathogenic variants in WAC gene: Expanding the phenotypic and genotypic spectrum of DeSanto-Shinawi syndrome PMID 35266333 - Phenotypic comparison of patients affected with DeSanto-Shinawi syndrome: Point mutations in WAC gene versus a 10p12.1 microdeletion including WAC PMID 33123400 - A Case of DeSanto-Shinawi Syndrome in Bahrain with a Novel Mutation PMID 29928181 - DeSanto-Shinawi Syndrome: First Case in South America

Other links: The DESSH Foundation HGNC entry for gene WAC

There are two papers modeling this disease in Drosophila that we at FlyBase would like to curate using this term.

My contact info: vjenkins@morgan.harvard.edu (FlyBase), 0000-0002-1567-7626. I'm happy to write a more detailed definition for this disease if that would help, but I don't want to overstep either. This is one of several diseases on FlyBase's internal "list of diseases we would curate using more specific DO terms if we could", so please tell me if I'm doing part of this term request wrong so that I can make the next one better. Thank you!

lschriml commented 2 years ago

Thank you for the term request. We will review and get this added. Cheers, Lynn

On Aug 2, 2022, at 5:13 PM, vjenkins @.***> wrote:

 I'd like to request a term for DeSanto-Shinawi syndrome:

OMIM: https://omim.org/entry/616708

Potential definition: DeSanto-Shinawi syndrome is a neurodevelopmental disorder [could put more detail here] that has_material_basis_in heterozygous mutation of the WAC gene on chromosome 10p11.

Potential parent term: autosomal dominant disease

Synonyms: DESSH, WAC syndrome, Facial dysmorphism-developmental delay-behavioral abnormalities syndrome due to WAC point mutation, WAC-Related Intellectual Disability

Two MedGen pages: Facial dysmorphism-developmental delay-behavioral abnormalities syndrome due to WAC point mutation(DESSH) linked to the original paper & the OMIM. ClinVar largely links pathogenic alleles of WAC to this disease. WAC-related facial dysmorphism-developmental delay-behavioral abnormalities syndrome linked to a different presentation of the disease, same gene of interest, found by PMID 34997803 which emphasizes cardiac defects not found by the original paper.

GeneReviews page: WAC-Related Intellectual Disability HGNC entry for gene WAC

Citations other than those in the OMIM entry: PMID 34997803 - Congenital heart defects associated with pathogenic variants in WAC gene: Expanding the phenotypic and genotypic spectrum of DeSanto-Shinawi syndrome PMID 35266333 - Phenotypic comparison of patients affected with DeSanto-Shinawi syndrome: Point mutations in WAC gene versus a 10p12.1 microdeletion including WAC PMID 33123400 - A Case of DeSanto-Shinawi Syndrome in Bahrain with a Novel Mutation PMID 29928181 - DeSanto-Shinawi Syndrome: First Case in South America

Other links: The DESSH Foundation HGNC entry for gene WAC

There are two papers modeling this disease in Drosophila that we at FlyBase would like to curate using this term.

My contact info: @.*** (FlyBase), 0000-0002-1567-7626. I'm happy to write a more detailed definition for this disease if that would help, but I don't want to overstep either. This is one of several diseases on FlyBase's internal "list of diseases we would curate using more specific DO terms if we could", so please tell me if I'm doing part of this term request wrong so that I can make the next one better. Thank you!

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you are subscribed to this thread.

lschriml commented 2 years ago

@vjenkinsFB -- please send us your list of terms: "list of diseases we would curate using more specific DO terms if we could -- In a ticket and/or as a spreadsheet, and we will prioritize their review and adding them to the DO.

Cheers, Lynn

lschriml commented 2 years ago

Added DeSanto-Shinawi syndrome to the DO.

Reviewing this new term: OMIM:616708

-- looks like several 'disease' records have been created over time, that are now brought together in this OMIM syndrome record.

Notes:

there are three associated Orphaned records:

ORPHA:284169 Facial dysmorphism-developmental delay-behavioral abnormalities syndrome due to 10p11.21p12.31 microdeletion

ORPHA:466943 WAC-related facial dysmorphism-developmental delay-behavioral abnormalities syndrome

ORPHA:466950 Facial dysmorphism-developmental delay-behavioral abnormalities syndrome due to WAC point mutation

Age of onset: Infancy, Childhood

https://pubmed.ncbi.nlm.nih.gov/35266333/

DeSanto-Shinawi syndrome is a rare neurodevelopmental disorder characterized by global developmental delay apparent in infancy or early childhood and associated with characteristic dysmorphic facial features, such as broad forehead, depressed nasal bridge with bulbous nasal tip, and deep-set eyes.

DeSanto-Shinawi syndrome is a rare neurodevelopmental disorder caused by loss-of-function variants of WAC, located on chromosome 10p12.1.

vjenkinsFB commented 2 years ago

Fantastic, thank you so much!