DiseaseOntology / HumanDiseaseOntology

Repository for the Human Disease Ontology.
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New digenic diseases #1226

Closed csbjohnson closed 7 months ago

csbjohnson commented 11 months ago
csbjohnson commented 11 months ago

Created in local repo, need review before pushing for: -CRANIOSYNOSTOSIS 7; CRS7 | OMIM: 617439 -USHER SYNDROME, TYPE IIC; USH2C | OMIM: 605472 -PROTEASOME-ASSOCIATED AUTOINFLAMMATORY SYNDROME 1; PRAAS1 | OMIM: 256040

-METHYLMALONIC ACIDURIA AND HOMOCYSTINURIA, cblC TYPE; MAHCC | OMIM: 277400 / Add "METHYLMALONIC ACIDURIA AND HOMOCYSTINURIA" ("MAHCC" as synonym) to DO as parent term. Add "cblC " subtype to DO. Also added all METHYLMALONIC ACIDURIA AND HOMOCYSTINURIA subtyped under the new created parent term

-PROTEASOME-ASSOCIATED AUTOINFLAMMATORY SYNDROME 3; PRAAS3 | OMIM: 617591 -FACIOSCAPULOHUMERAL MUSCULAR DYSTROPHY 3, DIGENIC; FSHD3 | OMIM: 619477 FACIOSCAPULOHUMERAL MUSCULAR DYSTROPHY 4, DIGENIC; FSHD4 | OMIM: 619478

csbjohnson commented 11 months ago

Request to create an 'autoinflammatory disease' parent term for PROTEASOME-ASSOCIATED AUTOINFLAMMATORY SYNDROME 1; PRAAS1 AND 3

Created 'autoinflammatory disease' parent term

csbjohnson commented 11 months ago

Interface optimization suggestion:

PROTEASOME-ASSOCIATED AUTOINFLAMMATORY SYNDROME 1; PRAAS1 | OMIM: 256040 /Why does (DOID:0090062) appear as a result when typing the disease? (not listed synonym) Is it the same? or interface error?

csbjohnson commented 11 months ago

BOMBAY PHENOTYPE | OMIM: 616754

Should it be added to the DO if it's a phenotype? no

allenbaron commented 11 months ago

Only diseases should be added to the DO. The inclusion of the word "phenotype" in the OMIM name doesn't necessarily mean it's not a disease.

In the case of "Bombay phenotype" specifically, it is a rare blood type and the OMIM entry uses wording that indicates it is like any other blood type and not a disease:

Bombay and para-Bombay individuals display no apparent deleterious phenotype except in circumstances requiring blood transfusion, wherein they are cross-match incompatible with all donors except other H-deficient individuals

csbjohnson commented 10 months ago

METHYLMALONIC ACIDURIA AND HOMOCYSTINURIA remove parent term