Consider adding UMLS hasDbXrefs

DiseaseOntology / SymptomOntology

The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance reported by a patient indicative of a disease”. Understanding the close relationship of Signs and Symptoms, where Signs are the objective observation of an illness, the Symptom Ontology will work to broaden it’s scope to capture and document in a more robust manor these two sets of terms. Understanding that at times, the same term may be both a Sign and a Symptom. The Symptom Ontology is available under CC0 license (https://creativecommons.org/publicdomain/zero/1.0/).

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Hello,

I utilized the SO for a recent project and needed to link various symptom entries to corresponding UMLS concepts. For quite a few, I noticed there were no UMLS DbXref values, so I ran their label values through MetaMapLite, then manually reviewed to make sure the UMLS concepts made sense and filtered for appropriate semantic types.

If these UMLS mappings would be of any value to the research community, please consider adding them.

SYMP_0000002 - abdominal distention UMLS_CUI:C0000731

SYMP_0000005 - ataxia UMLS_CUI:C0007758

SYMP_0000006 - backache UMLS_CUI:C0004604

SYMP_0000007 - bleeding UMLS_CUI:C0019080

SYMP_0000009 - blister UMLS_CUI:C1579830

SYMP_0000016 - confusion UMLS_CUI:C0009676

SYMP_0000020 - dehydration UMLS_CUI:C0011175

SYMP_0000021 - delirium UMLS_CUI:C0011206

SYMP_0000022 - depression UMLS_CUI:C0011581

SYMP_0000023 - disorientation UMLS_CUI:C0233407

SYMP_0000024 - drowsiness UMLS_CUI:C0013144

SYMP_0000025 - dry cough UMLS_CUI:C0850149

SYMP_0000030 - paralysis UMLS_CUI:C0522224

SYMP_0000032 - flaccidity UMLS_CUI:C0026825

SYMP_0000040 - hematuria UMLS_CUI:C0018965

SYMP_0000041 - hemorrhage UMLS_CUI:C0019080

SYMP_0000046 - hepatitis UMLS_CUI:C0019158

SYMP_0000047 - hepatosplenomegaly UMLS_CUI:C0019214

SYMP_0000054 - hypergammaglobulinemia UMLS_CUI:C0020455

SYMP_0000058 - hyperreflexia UMLS_CUI:C0151889

SYMP_0000059 - hypotension UMLS_CUI:C0020649

SYMP_0000064 - joint pain UMLS_CUI:C0003862

SYMP_0000075 - lethargy UMLS_CUI:C0023380

SYMP_0000083 - lymphangitis UMLS_CUI:C0024225

SYMP_0000086 - lymphopenia UMLS_CUI:C0024312

SYMP_0000092 - skin lesion UMLS_CUI:C0037284

SYMP_0000093 - muscle cramp UMLS_CUI:C0026821

SYMP_0000094 - muscle weakness UMLS_CUI:C0151786

SYMP_0000095 - myocarditis UMLS_CUI:C0027059

SYMP_0000098 - nephritis UMLS_CUI:C0027697

SYMP_0000099 - pain UMLS_CUI:C0030193

SYMP_0000107 - pleural effusion UMLS_CUI:C0032227

SYMP_0000114 - thrombocytopenia UMLS_CUI:C0040034

SYMP_0000116 - prostration UMLS_CUI:C0277794

SYMP_0000124 - seizure UMLS_CUI:C0036572

SYMP_0000125 - liver inflammation UMLS_CUI:C0019158

SYMP_0000128 - conjunctivitis UMLS_CUI:C0009763

SYMP_0000136 - skin ulcer UMLS_CUI:C0037299

SYMP_0000139 - sneezing UMLS_CUI:C0037383

SYMP_0000141 - spasticity UMLS_CUI:C0026838

SYMP_0000147 - steatorrhea UMLS_CUI:C0038238

SYMP_0000153 - vasculitis UMLS_CUI:C0042384

SYMP_0000162 - tremor UMLS_CUI:C0040822

SYMP_0000177 - weakness UMLS_CUI:C3714552

SYMP_0000186 - exhaustion UMLS_CUI:C0392674

SYMP_0000187 - tiredness UMLS_CUI:C0015672

SYMP_0000188 - abdominal discomfort UMLS_CUI:C0232487

SYMP_0000208 - anemia UMLS_CUI:C0002871

SYMP_0000210 - photophobia UMLS_CUI:C0085636

SYMP_0000225 - asthenia UMLS_CUI:C0004093

SYMP_0000231 - bradycardia UMLS_CUI:C0428977

SYMP_0000258 - double vision UMLS_CUI:C0012569

SYMP_0000260 - dry mouth UMLS_CUI:C0043352

SYMP_0000262 - endocarditis UMLS_CUI:C0014118

SYMP_0000263 - epididymitis UMLS_CUI:C0014534

SYMP_0000285 - flaccid paralysis UMLS_CUI:C0085620

SYMP_0000289 - eczema UMLS_CUI:C0013595

SYMP_0000292 - heart failure UMLS_CUI:C0018802

SYMP_0000293 - hemiparesis UMLS_CUI:C0018989

SYMP_0000295 - hepatic abscess UMLS_CUI:C0023885

SYMP_0000298 - hoarse voice UMLS_CUI:C0019825

SYMP_0000300 - hyperesthesia UMLS_CUI:C0020453

SYMP_0000302 - hypothermia UMLS_CUI:C0413252

SYMP_0000303 - hypoxemia UMLS_CUI:C0700292

SYMP_0000313 - joint inflammation UMLS_CUI:C0003864

SYMP_0000317 - leukopenia UMLS_CUI:C0023530

SYMP_0000318 - loss of balance UMLS_CUI:C0241981

SYMP_0000321 - loss of vision UMLS_CUI:C3665346

SYMP_0000333 - muscle tenderness UMLS_CUI:C0575064

SYMP_0000337 - night sweats UMLS_CUI:C0028081

SYMP_0000346 - papule UMLS_CUI:C1519353

SYMP_0000349 - paraplegia UMLS_CUI:C0030486

SYMP_0000354 - pneumonitis UMLS_CUI:C0032285

SYMP_0000356 - phlebitis UMLS_CUI:C0031542

SYMP_0000360 - emaciation UMLS_CUI:C0013911

SYMP_0000367 - proteinuria UMLS_CUI:C0033687

SYMP_0000369 - ptosis UMLS_CUI:C0005745

SYMP_0000372 - rhinorrhea UMLS_CUI:C1260880

SYMP_0000376 - severe diarrhea UMLS_CUI:C1443924

SYMP_0000383 - stiff neck UMLS_CUI:C0151315

SYMP_0000389 - stupor UMLS_CUI:C0085628

SYMP_0000393 - tinnitus UMLS_CUI:C0040264

SYMP_0000399 - vertigo UMLS_CUI:C0042571

SYMP_0000402 - cachexia UMLS_CUI:C0006625

SYMP_0000404 - dyspareunia UMLS_CUI:C0013394

SYMP_0000412 - anxiety UMLS_CUI:C0003467

SYMP_0000414 - dysarthria UMLS_CUI:C0013362

SYMP_0000420 - bloating UMLS_CUI:C1291077

SYMP_0000421 - hematochezia UMLS_CUI:C1321898

SYMP_0000422 - dyspepsia UMLS_CUI:C0013395

SYMP_0000427 - impotence UMLS_CUI:C0242350

SYMP_0000430 - pleuritic chest pain UMLS_CUI:C0008033

SYMP_0000432 - itching UMLS_CUI:C0033774

SYMP_0000434 - urticaria UMLS_CUI:C0042109

SYMP_0000435 - paresthesia UMLS_CUI:C0030554

SYMP_0000436 - abnormal vaginal bleeding UMLS_CUI:C0578503

SYMP_0000440 - hair loss UMLS_CUI:C0002170

SYMP_0000446 - bloodshot eye UMLS_CUI:C0155169

SYMP_0000462 - symptom UMLS_CUI:C1457887

SYMP_0000634 - leukocytosis UMLS_CUI:C0023518

SYMP_0000636 - maculopapular rash UMLS_CUI:C0423791

SYMP_0000654 - irritability UMLS_CUI:C0022107

SYMP_0000666 - abnormal behavior UMLS_CUI:C0233514

SYMP_0000672 - abscess UMLS_CUI:C0000833

SYMP_0000682 - altered mental status UMLS_CUI:C0278061

SYMP_0000686 - chronic cough UMLS_CUI:C0010201

SYMP_0000689 - cramp UMLS_CUI:C0026821

SYMP_0000715 - skin desquamation UMLS_CUI:C0237849

SYMP_0000731 - renal failure UMLS_CUI:C0035078

SYMP_0000734 - stroke UMLS_CUI:C0038454

SYMP_0000744 - cervical lymphadenopathy UMLS_CUI:C0235592

SYMP_0000756 - menorrhagia UMLS_CUI:C0025323

SYMP_0000760 - petechiae UMLS_CUI:C0031256

SYMP_0000765 - sensory disturbance UMLS_CUI:C0152027

SYMP_0000839 - acute pain UMLS_CUI:C0184567

SYMP_0000867 - gastrointestinal bleeding UMLS_CUI:C0017181

SYMP_0000868 - breathing problems UMLS_CUI:C1260922

SYMP_0000876 - pericardial effusion UMLS_CUI:C0031039

SYMP_0000895 - anaphylactic shock UMLS_CUI:C0002792

SYMP_0000896 - exophthalmos UMLS_CUI:C0015300

SYMP_0000900 - allergic reaction UMLS_CUI:C0020517

SYMP_0019142 - lymphadenopathy UMLS_CUI:C4282165

SYMP_0019145 - vomiting UMLS_CUI:C0042963

SYMP_0019147 - hematemesis UMLS_CUI:C0018926

SYMP_0019150 - pharyngitis UMLS_CUI:C0031350

SYMP_0019151 - pulmonary edema UMLS_CUI:C0034063

SYMP_0019153 - dyspnea UMLS_CUI:C0013404

SYMP_0019155 - lymphadenitis UMLS_CUI:C0024205

SYMP_0019160 - boil UMLS_CUI:C0242301

SYMP_0019161 - muscle pain UMLS_CUI:C0231528

SYMP_0019168 - pneumonia UMLS_CUI:C0032285

SYMP_0019169 - arthritis UMLS_CUI:C0003864

SYMP_0019173 - meningitis UMLS_CUI:C0025289

SYMP_0019174 - chills UMLS_CUI:C0085593

SYMP_0019176 - malaise UMLS_CUI:C0231218

SYMP_0019177 - fatigue UMLS_CUI:C0015672

SYMP_0019179 - lightheadedness UMLS_CUI:C0220870

SYMP_0019180 - constipation UMLS_CUI:C0009806

SYMP_0019181 - hoarseness UMLS_CUI:C0019825

SYMP_0019183 - hyperactivity UMLS_CUI:C0424295

SYMP_0020002 - anal abscess UMLS_CUI:C0281778

SYMP_0020003 - acholic stool UMLS_CUI:C2675627

SYMP_0020005 - acquired color vision deficiency UMLS_CUI:C0155018

SYMP_0020006 - agitation UMLS_CUI:C0085631

Thanks!

Wow. Thank you Nic !!Yes, we will add these mappings. We really appreciate your sharing them with us.Please let us know if you need any additional updates.Cheers,LynnSent from my iPhoneOn Aug 18, 2023, at 5:27 AM, Nic Dobbins @.***> wrote: Hello, I utilized the SO for a recent project and needed to link various symptom entries to corresponding UMLS concepts. For quite a few, I noticed there were no UMLS DbXref values, so I ran their label values through MetaMapLite, then manually reviewed to make sure the UMLS concepts made sense and filtered for appropriate semantic types. If these UMLS mappings would be of any value to the research community, please consider adding them. SYMP_0000002 - abdominal distention UMLS_CUI:C0000731 SYMP_0000005 - ataxia UMLS_CUI:C0007758 SYMP_0000006 - backache UMLS_CUI:C0004604 SYMP_0000007 - bleeding UMLS_CUI:C0019080 SYMP_0000009 - blister UMLS_CUI:C1579830 SYMP_0000016 - confusion UMLS_CUI:C0009676 SYMP_0000020 - dehydration UMLS_CUI:C0011175 SYMP_0000021 - delirium UMLS_CUI:C0011206 SYMP_0000022 - depression UMLS_CUI:C0011581 SYMP_0000023 - disorientation UMLS_CUI:C0233407 SYMP_0000024 - drowsiness UMLS_CUI:C0013144 SYMP_0000025 - dry cough UMLS_CUI:C0850149 SYMP_0000030 - paralysis UMLS_CUI:C0522224 SYMP_0000032 - flaccidity UMLS_CUI:C0026825 SYMP_0000040 - hematuria UMLS_CUI:C0018965 SYMP_0000041 - hemorrhage UMLS_CUI:C0019080 SYMP_0000046 - hepatitis UMLS_CUI:C0019158 SYMP_0000047 - hepatosplenomegaly UMLS_CUI:C0019214 SYMP_0000054 - hypergammaglobulinemia UMLS_CUI:C0020455 SYMP_0000058 - hyperreflexia UMLS_CUI:C0151889 SYMP_0000059 - hypotension UMLS_CUI:C0020649 SYMP_0000064 - joint pain UMLS_CUI:C0003862 SYMP_0000075 - lethargy UMLS_CUI:C0023380 SYMP_0000083 - lymphangitis UMLS_CUI:C0024225 SYMP_0000086 - lymphopenia UMLS_CUI:C0024312 SYMP_0000092 - skin lesion UMLS_CUI:C0037284 SYMP_0000093 - muscle cramp UMLS_CUI:C0026821 SYMP_0000094 - muscle weakness UMLS_CUI:C0151786 SYMP_0000095 - myocarditis UMLS_CUI:C0027059 SYMP_0000098 - nephritis UMLS_CUI:C0027697 SYMP_0000099 - pain UMLS_CUI:C0030193 SYMP_0000107 - pleural effusion UMLS_CUI:C0032227 SYMP_0000114 - thrombocytopenia UMLS_CUI:C0040034 SYMP_0000116 - prostration UMLS_CUI:C0277794 SYMP_0000124 - seizure UMLS_CUI:C0036572 SYMP_0000125 - liver inflammation UMLS_CUI:C0019158 SYMP_0000128 - conjunctivitis UMLS_CUI:C0009763 SYMP_0000136 - skin ulcer UMLS_CUI:C0037299 SYMP_0000139 - sneezing UMLS_CUI:C0037383 SYMP_0000141 - spasticity UMLS_CUI:C0026838 SYMP_0000147 - steatorrhea UMLS_CUI:C0038238 SYMP_0000153 - vasculitis UMLS_CUI:C0042384 SYMP_0000162 - tremor UMLS_CUI:C0040822 SYMP_0000177 - weakness UMLS_CUI:C3714552 SYMP_0000186 - exhaustion UMLS_CUI:C0392674 SYMP_0000187 - tiredness UMLS_CUI:C0015672 SYMP_0000188 - abdominal discomfort UMLS_CUI:C0232487 SYMP_0000208 - anemia UMLS_CUI:C0002871 SYMP_0000210 - photophobia UMLS_CUI:C0085636 SYMP_0000225 - asthenia UMLS_CUI:C0004093 SYMP_0000231 - bradycardia UMLS_CUI:C0428977 SYMP_0000258 - double vision UMLS_CUI:C0012569 SYMP_0000260 - dry mouth UMLS_CUI:C0043352 SYMP_0000262 - endocarditis UMLS_CUI:C0014118 SYMP_0000263 - epididymitis UMLS_CUI:C0014534 SYMP_0000285 - flaccid paralysis UMLS_CUI:C0085620 SYMP_0000289 - eczema UMLS_CUI:C0013595 SYMP_0000292 - heart failure UMLS_CUI:C0018802 SYMP_0000293 - hemiparesis UMLS_CUI:C0018989 SYMP_0000295 - hepatic abscess UMLS_CUI:C0023885 SYMP_0000298 - hoarse voice UMLS_CUI:C0019825 SYMP_0000300 - hyperesthesia UMLS_CUI:C0020453 SYMP_0000302 - hypothermia UMLS_CUI:C0413252 SYMP_0000303 - hypoxemia UMLS_CUI:C0700292 SYMP_0000313 - joint inflammation UMLS_CUI:C0003864 SYMP_0000317 - leukopenia UMLS_CUI:C0023530 SYMP_0000318 - loss of balance UMLS_CUI:C0241981 SYMP_0000321 - loss of vision UMLS_CUI:C3665346 SYMP_0000333 - muscle tenderness UMLS_CUI:C0575064 SYMP_0000337 - night sweats UMLS_CUI:C0028081 SYMP_0000346 - papule UMLS_CUI:C1519353 SYMP_0000349 - paraplegia UMLS_CUI:C0030486 SYMP_0000354 - pneumonitis UMLS_CUI:C0032285 SYMP_0000356 - phlebitis UMLS_CUI:C0031542 SYMP_0000360 - emaciation UMLS_CUI:C0013911 SYMP_0000367 - proteinuria UMLS_CUI:C0033687 SYMP_0000369 - ptosis UMLS_CUI:C0005745 SYMP_0000372 - rhinorrhea UMLS_CUI:C1260880 SYMP_0000376 - severe diarrhea UMLS_CUI:C1443924 SYMP_0000383 - stiff neck UMLS_CUI:C0151315 SYMP_0000389 - stupor UMLS_CUI:C0085628 SYMP_0000393 - tinnitus UMLS_CUI:C0040264 SYMP_0000399 - vertigo UMLS_CUI:C0042571 SYMP_0000402 - cachexia UMLS_CUI:C0006625 SYMP_0000404 - dyspareunia UMLS_CUI:C0013394 SYMP_0000412 - anxiety UMLS_CUI:C0003467 SYMP_0000414 - dysarthria UMLS_CUI:C0013362 SYMP_0000420 - bloating UMLS_CUI:C1291077 SYMP_0000421 - hematochezia UMLS_CUI:C1321898 SYMP_0000422 - dyspepsia UMLS_CUI:C0013395 SYMP_0000427 - impotence UMLS_CUI:C0242350 SYMP_0000430 - pleuritic chest pain UMLS_CUI:C0008033 SYMP_0000432 - itching UMLS_CUI:C0033774 SYMP_0000434 - urticaria UMLS_CUI:C0042109 SYMP_0000435 - paresthesia UMLS_CUI:C0030554 SYMP_0000436 - abnormal vaginal bleeding UMLS_CUI:C0578503 SYMP_0000440 - hair loss UMLS_CUI:C0002170 SYMP_0000446 - bloodshot eye UMLS_CUI:C0155169 SYMP_0000462 - symptom UMLS_CUI:C1457887 SYMP_0000634 - leukocytosis UMLS_CUI:C0023518 SYMP_0000636 - maculopapular rash UMLS_CUI:C0423791 SYMP_0000654 - irritability UMLS_CUI:C0022107 SYMP_0000666 - abnormal behavior UMLS_CUI:C0233514 SYMP_0000672 - abscess UMLS_CUI:C0000833 SYMP_0000682 - altered mental status UMLS_CUI:C0278061 SYMP_0000686 - chronic cough UMLS_CUI:C0010201 SYMP_0000689 - cramp UMLS_CUI:C0026821 SYMP_0000715 - skin desquamation UMLS_CUI:C0237849 SYMP_0000731 - renal failure UMLS_CUI:C0035078 SYMP_0000734 - stroke UMLS_CUI:C0038454 SYMP_0000744 - cervical lymphadenopathy UMLS_CUI:C0235592 SYMP_0000756 - menorrhagia UMLS_CUI:C0025323 SYMP_0000760 - petechiae UMLS_CUI:C0031256 SYMP_0000765 - sensory disturbance UMLS_CUI:C0152027 SYMP_0000839 - acute pain UMLS_CUI:C0184567 SYMP_0000867 - gastrointestinal bleeding UMLS_CUI:C0017181 SYMP_0000868 - breathing problems UMLS_CUI:C1260922 SYMP_0000876 - pericardial effusion UMLS_CUI:C0031039 SYMP_0000895 - anaphylactic shock UMLS_CUI:C0002792 SYMP_0000896 - exophthalmos UMLS_CUI:C0015300 SYMP_0000900 - allergic reaction UMLS_CUI:C0020517 SYMP_0019142 - lymphadenopathy UMLS_CUI:C4282165 SYMP_0019145 - vomiting UMLS_CUI:C0042963 SYMP_0019147 - hematemesis UMLS_CUI:C0018926 SYMP_0019150 - pharyngitis UMLS_CUI:C0031350 SYMP_0019151 - pulmonary edema UMLS_CUI:C0034063 SYMP_0019153 - dyspnea UMLS_CUI:C0013404 SYMP_0019155 - lymphadenitis UMLS_CUI:C0024205 SYMP_0019160 - boil UMLS_CUI:C0242301 SYMP_0019161 - muscle pain UMLS_CUI:C0231528 SYMP_0019168 - pneumonia UMLS_CUI:C0032285 SYMP_0019169 - arthritis UMLS_CUI:C0003864 SYMP_0019173 - meningitis UMLS_CUI:C0025289 SYMP_0019174 - chills UMLS_CUI:C0085593 SYMP_0019176 - malaise UMLS_CUI:C0231218 SYMP_0019177 - fatigue UMLS_CUI:C0015672 SYMP_0019179 - lightheadedness UMLS_CUI:C0220870 SYMP_0019180 - constipation UMLS_CUI:C0009806 SYMP_0019181 - hoarseness UMLS_CUI:C0019825 SYMP_0019183 - hyperactivity UMLS_CUI:C0424295 SYMP_0020002 - anal abscess UMLS_CUI:C0281778 SYMP_0020003 - acholic stool UMLS_CUI:C2675627 SYMP_0020005 - acquired color vision deficiency UMLS_CUI:C0155018 SYMP_0020006 - agitation UMLS_CUI:C0085631 Thanks!

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DiseaseOntology / SymptomOntology

Consider adding UMLS hasDbXrefs #16