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Precision Feedback Knowledge Base
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standardize CEDAR template @type field #217

Open zachll opened 1 month ago

zachll commented 1 month ago

The CEDAR template for PFBK message templates and causal pathways has been implemented inconsistently, and corrections to these metadata using the CEDAR tool is not straightforward.

Issues that are related to this problem:

  1. Message templates have a faulty IRI for the @type field:

Appears as: "@type": "http://data.bioontology.org/ontologies/PSDO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPSDO_0000002",

but should be corrected to appear as: "@type": "http://purl.obolibrary.org/obo/PSDO_0000002",

  1. Causal pathways have been implemented with a top level string "type" instead of the top level "@type" field, and need to be corrected and updated in the PFKB repo

Next steps are to figure out how to update the CEDAR template and regenerate message templates

pboisver commented 1 month ago

Update the PFP when this is fixed (in candidate pudding)