Inside each function of run_batch_general.py the "Metadata_Well" is formatted with '%02d' but sometimes we have images from different microscopes where the well name would be A1 instead of A01.
I added a flag well_bool = False #True to A01, False to A1 and changed inside each function the '%02d' for well_format. And then added:
if well_bool:
well_format = '%02d'
else:
well_format = '%01d'
Probably would need to change that as well for Metadata_Site because I think some microscopes could also have sites = 1 or 01.
I'm not sure if that's the best place to add this functionality but worked for me.
Inside each function of run_batch_general.py the "Metadata_Well" is formatted with '%02d' but sometimes we have images from different microscopes where the well name would be A1 instead of A01.
I added a flag
well_bool = False #True to A01, False to A1
and changed inside each function the '%02d' for well_format. And then added:Probably would need to change that as well for Metadata_Site because I think some microscopes could also have sites = 1 or 01.
I'm not sure if that's the best place to add this functionality but worked for me.
run_batch_general_modified.txt