Development andres

[andreshyer]

Add Features

• Added option to be able to store and pull featurized data. This allows us to not have to store excess data in Neo4j and seperate csvs files.

• File organization. Our core folder was starting to get cluttered, so some movement of files was done to help clean up our files.

Bug Fixes

• Neo4j is no longer required to be running when running MLModels, except when pushing data to Neo4j. Parameters can be now be passed, so we no longer need to save a master password.

Note

• MySql is not required to featurize data unless called

How to setup MySql server

For a detailed explation of install MySql on Windows, please follow the tutorial at https://www.youtube.com/watch?v=WuBcTJnIuzo. For installing on Ubuntu, please follow the tutorial at https://www.digitalocean.com/community/tutorials/how-to-install-mysql-on-ubuntu-20-04.

When installing MySql, be sure to use developer default. Once MySql is installed, make a new database to store the featurized datasets.

After MySql is installed, it is highly recommended you install and configure Datagrip. Datagrip is cross-platform and part of the Jetbeans suite, and makes it easy to view and interact with the data you MySql.

This is what Datagrip looks like when setup

Finally, test your connection in Python using example_run_with_mysql_and_neo4j(). This will test both your Neo4j and MySql connections at the same time.

[pep8speaks]

Hello @andreshyer! Thanks for updating this PR. We checked the lines you've touched for PEP 8 issues, and found:

• In the file core/features.py:

Line 42:80: E501 line too long (88 > 79 characters) Line 208:80: E501 line too long (109 > 79 characters)

• In the file core/models.py:

Line 20:80: E501 line too long (111 > 79 characters) Line 48:80: E501 line too long (109 > 79 characters) Line 75:80: E501 line too long (128 > 79 characters) Line 96:80: E501 line too long (82 > 79 characters) Line 127:80: E501 line too long (111 > 79 characters) Line 128:80: E501 line too long (80 > 79 characters) Line 129:80: E501 line too long (81 > 79 characters) Line 133:80: E501 line too long (80 > 79 characters) Line 135:80: E501 line too long (83 > 79 characters) Line 137:80: E501 line too long (100 > 79 characters) Line 141:80: E501 line too long (102 > 79 characters) Line 142:80: E501 line too long (102 > 79 characters) Line 144:80: E501 line too long (97 > 79 characters) Line 147:80: E501 line too long (92 > 79 characters)

• In the file core/neo4j/nodes_to_neo4j.py:

Line 84:80: E501 line too long (80 > 79 characters) Line 85:80: E501 line too long (82 > 79 characters) Line 171:80: E501 line too long (83 > 79 characters)

• In the file core/neo4j/output_to_neo4j.py:

Line 25:80: E501 line too long (101 > 79 characters) Line 48:80: E501 line too long (101 > 79 characters)

• In the file core/neo4j/prep_from_outputs.py:

Line 95:80: E501 line too long (111 > 79 characters) Line 96:80: E501 line too long (80 > 79 characters) Line 97:80: E501 line too long (81 > 79 characters)

• In the file core/neo4j/rel_to_neo4j.py:

Line 26:80: E501 line too long (80 > 79 characters) Line 27:80: E501 line too long (82 > 79 characters) Line 66:80: E501 line too long (107 > 79 characters) Line 67:80: E501 line too long (104 > 79 characters) Line 68:80: E501 line too long (107 > 79 characters)

• In the file core/storage/mysql_storage.py:

Line 23:80: E501 line too long (104 > 79 characters) Line 24:80: E501 line too long (108 > 79 characters) Line 31:80: E501 line too long (81 > 79 characters) Line 36:80: E501 line too long (117 > 79 characters) Line 38:80: E501 line too long (97 > 79 characters) Line 39:80: E501 line too long (90 > 79 characters) Line 41:80: E501 line too long (105 > 79 characters) Line 44:80: E501 line too long (111 > 79 characters) Line 45:80: E501 line too long (99 > 79 characters) Line 47:80: E501 line too long (103 > 79 characters) Line 48:80: E501 line too long (91 > 79 characters) Line 50:80: E501 line too long (99 > 79 characters) Line 70:80: E501 line too long (87 > 79 characters) Line 80:80: E501 line too long (118 > 79 characters) Line 81:80: E501 line too long (105 > 79 characters) Line 83:80: E501 line too long (111 > 79 characters) Line 102:80: E501 line too long (110 > 79 characters) Line 113:80: E501 line too long (96 > 79 characters) Line 115:80: E501 line too long (81 > 79 characters) Line 116:80: E501 line too long (117 > 79 characters) Line 119:80: E501 line too long (80 > 79 characters) Line 120:80: E501 line too long (96 > 79 characters) Line 121:80: E501 line too long (87 > 79 characters) Line 122:80: E501 line too long (96 > 79 characters) Line 123:80: E501 line too long (89 > 79 characters) Line 151:80: E501 line too long (83 > 79 characters) Line 164:80: E501 line too long (113 > 79 characters) Line 165:80: E501 line too long (117 > 79 characters) Line 166:80: E501 line too long (104 > 79 characters) Line 168:80: E501 line too long (107 > 79 characters) Line 173:80: E501 line too long (84 > 79 characters) Line 176:80: E501 line too long (90 > 79 characters) Line 181:80: E501 line too long (110 > 79 characters) Line 185:80: E501 line too long (97 > 79 characters) Line 188:80: E501 line too long (88 > 79 characters) Line 190:80: E501 line too long (100 > 79 characters) Line 192:80: E501 line too long (120 > 79 characters) Line 194:80: E501 line too long (115 > 79 characters) Line 204:80: E501 line too long (87 > 79 characters) Line 207:80: E501 line too long (83 > 79 characters) Line 215:80: E501 line too long (95 > 79 characters) Line 231:80: E501 line too long (98 > 79 characters) Line 233:80: E501 line too long (100 > 79 characters) Line 234:80: E501 line too long (100 > 79 characters) Line 235:80: E501 line too long (88 > 79 characters)

• In the file core/storage/qsardq_export.py:

Line 72:26: W605 invalid escape sequence '-' Line 72:29: W605 invalid escape sequence '\d'

• In the file core/storage/storage.py:

Line 193:26: W605 invalid escape sequence '-' Line 193:29: W605 invalid escape sequence '\d' Line 199:80: E501 line too long (92 > 79 characters) Line 201:80: E501 line too long (88 > 79 characters) Line 203:80: E501 line too long (99 > 79 characters) Line 217:33: W605 invalid escape sequence '\$' Line 217:35: W605 invalid escape sequence '\$' Line 229:80: E501 line too long (108 > 79 characters)

• In the file main.py:

Line 163:80: E501 line too long (95 > 79 characters) Line 167:80: E501 line too long (109 > 79 characters) Line 176:80: E501 line too long (115 > 79 characters) Line 189:80: E501 line too long (92 > 79 characters) Line 218:80: E501 line too long (90 > 79 characters)

• In the file tests/test_misc.py:

Line 11:1: E402 module level import not at top of file

Comment last updated at 2020-07-21 19:44:19 UTC