Closed Dominic-DallOsto closed 3 years ago
Work out what to do with the hippocampus being in both atlases. And the other overlapping bits...
Work out what to do with the hippocampus being in both atlases. And the other overlapping bits...
Looks like both atlases use similar definitions of the hippocampus, so probably just add them together
Decided just to remove the left and right hippocampi from the subcortical atlas - most of the volume is covered by finer grained structures in the Glasser atlases (hippocampus, entorhinal cortex, presubiculum, ...)
Examining the combined atlas showed issues -- normalising the binary masks to the grey matter TPM didn't work (likely because trying to align a binary mask with a smooth probability map tend to "contract" the binary mask to the higher values of the TPM). Try combining the maps without realigning, but just reslicing.