Version update

[naurasd]

Hi

I updated to the most recent version using

pip install --upgrade boldigger-cline

However, whenever I check the version of boldigger-cline, it says it's 1.0.0. Wasn't 2.0.0 the latest release?

Thanks

nauras

[DominikBuchner]

Since "-" is forbidden in python modules you'd have to install it with:

pip instal --upgrade boldigger_cline

[naurasd]

alright, got it. thanks. but the initial installation with "-" if i remember correctly?!

either way, the github page should probably be updated accordingly then.

thanks again for the help.

Nauras

[DominikBuchner]

done

[naurasd]

Hi, could you re-open this please?

I had boldigger_cline v2.1.2 installed and updated to v.2.2.0 according to your instructions above. See the last part of the installation output below:

Installing collected packages: boldigger, boldigger_cline
  Attempting uninstall: boldigger
    Found existing installation: boldigger 2.1.2
    Uninstalling boldigger-2.1.2:
      Successfully uninstalled boldigger-2.1.2
  Attempting uninstall: boldigger_cline
    Found existing installation: boldigger-cline 2.1.2
    Uninstalling boldigger-cline-2.1.2:
      Successfully uninstalled boldigger-cline-2.1.2
Successfully installed boldigger-2.2.0 boldigger_cline-2.2.0

However, when I check the installed version, it still says 1.0.0. See below:

(digger_env) -bash-4.2$ boldigger-cline --version
1.0.0

Any idea what's going on here?

[DominikBuchner]

Hi there, my assumption would be that you have two different versions of python installed. One where pip is pointing to, the other where boldigger-cline is pointing to. When calling boldigger-cline you can specify which python version to use with: pythonX.X -m boldigger-cline (X.X refers to the version you want to call)

Can you please check if this is solving your issue? Alternatively, to show which version you have installed you can also run pip freeze or pipX.X freeze (X.X) again for you version, to show all installed packages

[naurasd]

Thanks for the reply. Yes, something like this must be going on here.

Running bildigger-cline vwith miniconda. Have to figure this out with our HPC people.

Thanks for pointing me in the right direction. Will close this for now, as this is probably not a boldigger-cline issue.

[naurasd]

To me it seems as there really is an issue here. While leaving the problem with boldigger-cline in conda on an HPC aside, I just wanted to check this on my personal machine.

I uninstalled boldigger-cline:

$ pip uninstall boldigger_cline
Found existing installation: boldigger-cline 2.2.0
Uninstalling boldigger-cline-2.2.0:
  Would remove:
    c:\users\nauras\programs\python\python39\lib\site-packages\boldigger_cline-2.2.0.dist-info\*
    c:\users\nauras\programs\python\python39\lib\site-packages\boldigger_cline\*
    c:\users\nauras\programs\python\python39\scripts\boldigger-cline.exe
Proceed (Y/n)? Y
  Successfully uninstalled boldigger-cline-2.2.0

Installed again:

$ pip install boldigger_cline
Collecting boldigger_cline
  Using cached boldigger_cline-2.2.0-py3-none-any.whl (16 kB)
Requirement already satisfied: boldigger>=2.2.0 in c:\users\nauras\programs\python\python39\lib\site-packages (from boldigger_cline) (2.2.0)
.
.
.
Installing collected packages: boldigger_cline
Successfully installed boldigger_cline-2.2.0

However, when checking the version, it still says 1.0.0:

$ boldigger-cline --version
1.0.0

I just have one version of python installed on my personal machine:

$ py -0
Installed Pythons found by C:\WINDOWS\py.exe Launcher for Windows
 -3.9-64 *

So something must be up here. What am I misunderstanding?

Cheers

nauras

[DominikBuchner]

Fixed with version 2.2.1

[naurasd]

Ok, so I was using the latest version after all, it just showed the incorrect version?

[DominikBuchner]

Yes, now I still need to find a solution for the deviation between website and BOLDigger output which seems impossible to me, because they are retrieved from the same source. But I'll dig into this next week when I have time again :)