API verification fails

[naurasd]

Hi (me again, I know),

API verification fails. See error message:

$ boldigger-cline api_verification trial.xlsx COI_cluster_reps_curated_no_contam.fa 14:55:20: Starting API verification. 14:55:20: Collection OTUs without species level identification and high similarity. Traceback (most recent call last): File "c:\users\nauras\programs\python\python39\lib\runpy.py", line 197, in _run_module_as_main return _run_code(code, main_globals, None, File "c:\users\nauras\programs\python\python39\lib\runpy.py", line 87, in _run_code exec(code, run_globals) File "C:\Users\Nauras\Programs\Python\Python39\Scripts\boldigger-cline.exe__main.py", line 7, in File "c:\users\nauras\programs\python\python39\lib\site-packages\boldigger_cline__main__.py", line 73, in main api_verification.main(args.xlsx_path, args.fasta_path) File "c:\users\nauras\programs\python\python39\lib\site-packages\boldigger_cline\api_verification.py", line 17, in main raw_data, data_to_check, seq_dict = extract_data(xlsx_path, fasta_path) File "c:\users\nauras\programs\python\python39\lib\site-packages\boldigger\api_verification.py", line 31, in extract_data raw_data = pd.read_excel(xlsx_path, sheet_name = 'BOLDigger hit') File "c:\users\nauras\programs\python\python39\lib\site-packages\pandas\util_decorators.py", line 296, in wrapper return func(*args, **kwargs) File "c:\users\nauras\programs\python\python39\lib\site-packages\pandas\io\excel_base.py", line 304, in read_excel io = ExcelFile(io, engine=engine) File "c:\users\nauras\programs\python\python39\lib\site-packages\pandas\io\excel_base.py", line 867, in init self._reader = self._enginesengine File "c:\users\nauras\programs\python\python39\lib\site-packages\pandas\io\excel_xlrd.py", line 22, in init super().init(filepath_or_buffer) File "c:\users\nauras\programs\python\python39\lib\site-packages\pandas\io\excel_base.py", line 353, in init self.book = self.load_workbook(filepath_or_buffer) File "c:\users\nauras\programs\python\python39\lib\site-packages\pandas\io\excel_xlrd.py", line 37, in load_workbook return open_workbook(filepath_or_buffer) File "c:\users\nauras\programs\python\python39\lib\site-packages\xlrd\init__.py", line 170, in open_workbook raise XLRDError(FILE_FORMAT_DESCRIPTIONS[file_format]+'; not supported') xlrd.biffh.XLRDError: Excel xlsx file; not supported

Seems like a problem with reading Excel files?? BOLDiger results file with BOLDigger top hits attached. trial.xlsx

I have upgraded to the most recent version of boldigger-cline, but for some reason it keeps saying version 1.0.0 is installed.

Cheers

Nauras

[DominikBuchner]

Will be fixed by using the correct upgrade. See my comment on the other issue.

[naurasd]

Thanks, appreciate it.