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DominikBuchner / BOLDigger3

MIT License
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Playwright issue #9

Open OndroV opened 1 day ago

OndroV commented 1 day ago

Hello,

after playwright install or even python3.12 -m playwright install I get this message: /home/ono/.local/lib/python3.12/site-packages/playwright/driver/node: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.28' not found (required by /home/ono/.local/lib/python3.12/site-packages/playwright/driver/node)

The same message appears right after starting python3.12 -m boldigger3 identify my.fasta --db 3 --mode 3, which can generate the requests, but then stops with error. Any ideas what to do, please?

image

This is on WSL Ubuntu 18.04.5 , where python refers to version 3.8.5, so I call python3.12 -m in all the commands related with boldigger. I did perform the four pip3.12 commands concerning pyppeteer for boligger2 users. Seems that this error message is common in many tools ( 1 , 2 , 3 ... ) but I'm not sure what to take from the diverging replies there. Soon I will have to move to a newer system anyway, but perhaps there are some easy fixes to broaden boldigger's compatibility?

Thanks! Ondrej

DominikBuchner commented 1 day ago

It seems to be an Ubuntu-specific issue. I will have to do some digging here. Any chance to switch OS and see if the problem persists?

OndroV commented 1 day ago

Sure, I totally forgot that windows' command prompt could be useful (after so many disappointments with it :D ) Got an error during installation, but boldigger3 was installed and runs OK image Thank you very much!

TillMacher commented 1 day ago

I have implemented BOLDigger3 in the apscale conda environment. This way the installation worked smoothly for me on W11.