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DorresteinLaboratory / NAP_ProteoSAFe

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NAP doesn't work #4

Closed Jingxian-Ren closed 2 years ago

Jingxian-Ren commented 2 years ago

When I upload the data for nap and run the NAP tool on the web, the result showed an error below. What should I do to deal with the error?

Error in file(file, "rt") : cannot open the connection Calls: write.table -> is.data.frame -> read.delim -> read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file 'metfrag_out/final_summary.txt': No such file or directory Execution halted Tool execution terminates abnormally with exit code [1]

ridasilva commented 2 years ago

HI @Jingxian-Ren, do you have the url from the job? If you could post your question at the forum https://groups.google.com/forum/#!forum/molecular_networking_bug_reports

it would help us.

Jingxian-Ren commented 2 years ago

OK， I will post the question there later. Thx

Jingxian-Ren commented 2 years ago

My job URL: https://proteomics2.ucsd.edu/ProteoSAFe/status.jsp?task=e042626d5d5c4fea960e2f26c9db4a41

rsilvabioinfo commented 2 years ago

It seems you don't have any database selected, either select one or more from here COCONUT, GNPS, HMDB, SUPNAT, NPAtlas, CHEBI, DRUGBANK and FooDB

Or provide a file in the specified format. Take a look at the documentation https://ccms-ucsd.github.io/GNPSDocumentation/nap/

Em qui., 9 de jun. de 2022 às 23:21, Jingxian-Ren @.***> escreveu:

My job URL: https://proteomics2.ucsd.edu/ProteoSAFe/status.jsp?task=e042626d5d5c4fea960e2f26c9db4a41

— Reply to this email directly, view it on GitHub https://github.com/DorresteinLaboratory/NAP_ProteoSAFe/issues/4#issuecomment-1151847248, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAN2SA2PYKENGUA23OGV6HTVOKRC7ANCNFSM5YJDQYGA . You are receiving this because you are subscribed to this thread.Message ID: @.***>

Jingxian-Ren commented 2 years ago

Thanks a lot. The NAP is running well.