Open lapotok opened 4 years ago
I totally agree with your suggestion @lapotok . That said, a quick workaround is to load tidyverse
after drc
.
Loading tidyverse
before drc
:
> library(tidyverse)
── Attaching packages ────────────────────────────────── tidyverse 1.3.0 ──
✓ ggplot2 3.3.3 ✓ purrr 0.3.4
✓ tibble 3.0.5 ✓ dplyr 1.0.3
✓ tidyr 1.1.2 ✓ stringr 1.4.0
✓ readr 1.3.1 ✓ forcats 0.5.0
── Conflicts ───────────────────────────────────── tidyverse_conflicts() ──
x dplyr::filter() masks stats::filter()
x dplyr::lag() masks stats::lag()
> library(drc)
Loading required package: MASS
Attaching package: ‘MASS’
The following object is masked from ‘package:dplyr’:
select
'drc' has been loaded.
Please cite R and 'drc' if used for a publication,
for references type 'citation()' and 'citation('drc')'.
Attaching package: ‘drc’
The following objects are masked from ‘package:stats’:
gaussian, getInitial
> mtcars %>%
+ select(mpg)
Error in select(., mpg) : unused argument (mpg)
Loading tidyverse
after drc
:
> library(drc)
Loading required package: MASS
'drc' has been loaded.
Please cite R and 'drc' if used for a publication,
for references type 'citation()' and 'citation('drc')'.
Attaching package: ‘drc’
The following objects are masked from ‘package:stats’:
gaussian, getInitial
> library(tidyverse)
── Attaching packages ─────────────────────────────────── tidyverse 1.3.0 ──
✓ ggplot2 3.3.3 ✓ purrr 0.3.4
✓ tibble 3.0.5 ✓ dplyr 1.0.3
✓ tidyr 1.1.2 ✓ stringr 1.4.0
✓ readr 1.3.1 ✓ forcats 0.5.0
── Conflicts ────────────────────────────────────── tidyverse_conflicts() ──
x dplyr::filter() masks stats::filter()
x dplyr::lag() masks stats::lag()
x dplyr::select() masks MASS::select()
> mtcars %>%
+ select(mpg)
mpg
Mazda RX4 21.0
Mazda RX4 Wag 21.0
Datsun 710 22.8
Hornet 4 Drive 21.4
Hornet Sportabout 18.7
...
You can see from the conflicts
section the the only function tidyverse
masks from MASS
is select
Dear
drc
developers,I like your package very much and use it all the time in my work. Also I enjoy using
tidyverse
metapackage with its pipelines. But there's an issue that prevents me from using both with comfort. I can see that you are usingMASS
package for some calculations. Unfortunately, importing all its functions into user environment can cause name conflicts (e.g.select()
function from dplyr). Currently I have to manually detachMASS
package to keep working normally withselect()
fromdplyr
, or explicitly statedplyr::select()
, or usedrc
functions likedrc::drm(formula, data, fct = drc::LL.4() ...)
to prevent attachingMASS
. I'd suggest to runMASS
functions without attaching them, likeMASS::boxcox()
.Best regards, Evgeny