fstitch bidir module failing on some versions of refseq files due to scaffolding chromosomes

Dowell-Lab / FStitch

Fast Stitch Reader (FStitch) -- fast-processing tool written in C for the annotation of regions of active transcription.

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fstitch bidir module failing on some versions of refseq files due to scaffolding chromosomes #13

Closed magruca closed 5 years ago

magruca commented 5 years ago

Found a bug with latest release of mm10 refseq genome in that FStitch bidir will fail due to a start value <0. Need to add additional check to make sure this doesn't happen

magruca commented 5 years ago

Fixed and updated on pypi in version 0.2.1