Closed Tianqi-Ma closed 1 year ago
At present, the scMAGIC doesn't support that the input includes both human and mouse data. You can use the function "transformHomoloGene" to transform the mouse data to the human data, then concat the two matrix as the input.
Hi,
I was trying to apply scMAGIC on my human mouse mixed 10x data, whose row names are all start with 'GRCh38-' and 'mm10---'.
So I add 'GRCh38-' to all row names in ref dataset, which contains only human cells (as I want to annotate human cells for test run)
But I got an error saying
Is this because of the prefix of gene names? The pipeline used to work perfectly on my other dataset (human cells only).
BTW, does scMAGIC support human mouse mixed dataset? I specify 'HCL' in altas as I only want to annotate human cell types.
Hope receive your reply soon and have a nice day!